A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.1
nTPM
Monaco:
209.9
nTPM
Schmiedel:
42.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.1
HPA sample
nTPM
Classical monocyte nTPM: 105.1
Samples: 6
Max nTPM: 130.2
Min nTPM: 84.5
P10809_1003
86.2
P10809_1020
119.6
P10809_1039
84.5
P10809_1058
130.2
P10809_1080
103.8
P10809_1107
106.2
Intermediate monocyte nTPM: 92.3
Samples: 6
Max nTPM: 228.1
Min nTPM: 50.1
P10809_1004
50.1
P10809_1023
55.1
P10809_1042
77.7
P10809_1061
228.1
P10809_1081
67.2
P10809_1108
75.4
Non-classical monocyte nTPM: 47.1
Samples: 5
Max nTPM: 117.3
Min nTPM: 21.4
P10809_1005
21.7
P10809_1053
48.9
P10809_1072
117.3
P10809_1082
21.4
P10809_1109
26.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.9
Monaco sample
nTPM
Classical monocyte nTPM: 209.9
Samples: 4
Max nTPM: 250.1
Min nTPM: 118.1
RHH5313_R3680
234.8
RHH5221_R3593
236.4
RHH5250_R3622
118.1
RHH5279_R3651
250.1
Intermediate monocyte nTPM: 133.7
Samples: 4
Max nTPM: 177.9
Min nTPM: 63.2
RHH5314_R3681
139.4
RHH5222_R3594
177.9
RHH5251_R3623
63.2
RHH5280_R3652
154.4
Non-classical monocyte nTPM: 107.6
Samples: 4
Max nTPM: 128.9
Min nTPM: 70.7
RHH5315_R3682
103.6
RHH5223_R3595
127.3
RHH5252_R3624
70.7
RHH5281_R3653
128.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.6
Schmiedel sample id
TPM
Classical monocyte TPM: 42.6
Samples: 91
Max TPM: 103.6
Min TPM: 25.1
MONOCYTES_1
103.6
MONOCYTES_2
101.2
MONOCYTES_3
95.4
MONOCYTES_4
85.9
MONOCYTES_5
68.3
MONOCYTES_6
64.5
MONOCYTES_7
63.4
MONOCYTES_8
61.7
MONOCYTES_9
61.7
MONOCYTES_10
57.9
MONOCYTES_11
57.4
MONOCYTES_12
57.3
MONOCYTES_13
54.9
MONOCYTES_14
54.2
MONOCYTES_15
52.6
MONOCYTES_16
51.3
MONOCYTES_17
48.4
MONOCYTES_18
48.0
MONOCYTES_19
47.3
MONOCYTES_20
47.2
MONOCYTES_21
46.0
MONOCYTES_22
45.0
MONOCYTES_23
44.8
MONOCYTES_24
44.6
MONOCYTES_25
44.2
MONOCYTES_26
43.4
MONOCYTES_27
43.0
MONOCYTES_28
42.6
MONOCYTES_29
42.5
MONOCYTES_30
42.5
MONOCYTES_31
42.3
MONOCYTES_32
42.0
MONOCYTES_33
42.0
MONOCYTES_34
41.5
MONOCYTES_35
41.5
MONOCYTES_36
41.3
MONOCYTES_37
41.0
MONOCYTES_38
40.9
MONOCYTES_39
40.4
MONOCYTES_40
39.9
MONOCYTES_41
39.9
MONOCYTES_42
39.4
MONOCYTES_43
39.2
MONOCYTES_44
39.1
MONOCYTES_45
39.1
MONOCYTES_46
38.9
MONOCYTES_47
38.9
MONOCYTES_48
38.9
MONOCYTES_49
38.7
MONOCYTES_50
38.6
MONOCYTES_51
38.5
MONOCYTES_52
38.2
MONOCYTES_53
38.2
MONOCYTES_54
38.1
MONOCYTES_55
38.1
MONOCYTES_56
38.0
MONOCYTES_57
37.3
MONOCYTES_58
37.2
MONOCYTES_59
36.9
MONOCYTES_60
36.9
MONOCYTES_61
36.9
MONOCYTES_62
36.1
MONOCYTES_63
35.0
MONOCYTES_64
34.4
MONOCYTES_65
34.1
MONOCYTES_66
34.0
MONOCYTES_67
33.9
MONOCYTES_68
33.8
MONOCYTES_69
33.5
MONOCYTES_70
33.4
MONOCYTES_71
33.0
MONOCYTES_72
32.9
MONOCYTES_73
32.3
MONOCYTES_74
31.8
MONOCYTES_75
31.8
MONOCYTES_76
31.8
MONOCYTES_77
31.7
MONOCYTES_78
31.6
MONOCYTES_79
31.1
MONOCYTES_80
30.6
MONOCYTES_81
29.9
MONOCYTES_82
29.3
MONOCYTES_83
29.3
MONOCYTES_84
28.6
MONOCYTES_85
28.5
MONOCYTES_86
28.4
MONOCYTES_87
28.1
MONOCYTES_88
27.6
MONOCYTES_89
27.2
MONOCYTES_90
26.2
MONOCYTES_91
25.1
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Non-classical monocyte TPM: 25.2
Samples: 90
Max TPM: 81.0
Min TPM: 15.7
M2_1
81.0
M2_2
54.7
M2_3
53.6
M2_4
44.2
M2_5
43.6
M2_6
40.5
M2_7
37.7
M2_8
36.6
M2_9
34.0
M2_10
31.7
M2_11
30.5
M2_12
30.4
M2_13
30.3
M2_14
29.8
M2_15
29.5
M2_16
29.4
M2_17
29.1
M2_18
29.0
M2_19
28.7
M2_20
27.9
M2_21
27.7
M2_22
27.5
M2_23
27.3
M2_24
27.0
M2_25
26.6
M2_26
26.0
M2_27
25.9
M2_28
25.7
M2_29
25.2
M2_30
25.1
M2_31
24.9
M2_32
24.9
M2_33
24.5
M2_34
24.5
M2_35
24.5
M2_36
24.4
M2_37
24.4
M2_38
24.4
M2_39
24.3
M2_40
24.1
M2_41
24.0
M2_42
23.7
M2_43
23.7
M2_44
23.6
M2_45
23.5
M2_46
23.1
M2_47
23.1
M2_48
23.0
M2_49
22.8
M2_50
22.8
M2_51
22.8
M2_52
22.6
M2_53
22.4
M2_54
22.0
M2_55
21.8
M2_56
21.7
M2_57
21.7
M2_58
21.3
M2_59
21.2
M2_60
21.2
M2_61
21.1
M2_62
21.0
M2_63
21.0
M2_64
20.8
M2_65
20.7
M2_66
20.5
M2_67
20.1
M2_68
19.9
M2_69
19.9
M2_70
19.6
M2_71
19.3
M2_72
18.8
M2_73
18.7
M2_74
18.3
M2_75
18.2
M2_76
18.1
M2_77
18.0
M2_78
17.9
M2_79
17.7
M2_80
17.2
M2_81
17.2
M2_82
17.0
M2_83
16.8
M2_84
16.7
M2_85
16.6
M2_86
16.2
M2_87
16.2
M2_88
16.0
M2_89
15.8
M2_90
15.7
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