A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
545.9
nTPM
Monaco:
883.7
nTPM
Schmiedel:
1032.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
545.9
HPA sample
nTPM
Memory B-cell nTPM: 545.9
Samples: 6
Max nTPM: 674.1
Min nTPM: 425.6
P10809_1017
466.2
P10809_1025
674.1
P10809_1044
425.6
P10809_1063
571.9
P10809_1092
636.1
P10809_1105
501.2
Naive B-cell nTPM: 475.1
Samples: 6
Max nTPM: 777.0
Min nTPM: 312.5
P10809_1011
312.5
P10809_1029
514.2
P10809_1048
777.0
P10809_1067
388.6
P10809_1091
418.6
P10809_1104
439.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
883.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 771.3
Samples: 4
Max nTPM: 896.7
Min nTPM: 669.1
RHH5310_R3677
772.2
RHH5218_R3590
669.1
RHH5247_R3619
896.7
RHH5276_R3648
747.2
Naive B-cell nTPM: 698.0
Samples: 4
Max nTPM: 823.8
Min nTPM: 544.6
RHH5308_R3675
544.6
RHH5216_R3588
823.8
RHH5245_R3617
724.3
RHH5274_R3646
699.3
Non-switched memory B-cell nTPM: 855.1
Samples: 4
Max nTPM: 958.0
Min nTPM: 785.6
RHH5309_R3676
785.6
RHH5217_R3589
862.0
RHH5246_R3618
958.0
RHH5275_R3647
814.9
Plasmablast nTPM: 883.7
Samples: 4
Max nTPM: 1034.4
Min nTPM: 814.1
RHH5312_R3679
859.3
RHH5220_R3592
1034.4
RHH5249_R3621
814.1
RHH5278_R3650
826.8
Switched memory B-cell nTPM: 764.0
Samples: 4
Max nTPM: 786.7
Min nTPM: 750.7
RHH5311_R3678
786.7
RHH5219_R3591
750.7
RHH5248_R3620
763.7
RHH5277_R3649
754.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1032.8
Schmiedel sample id
TPM
Naive B-cell TPM: 1032.8
Samples: 91
Max TPM: 1515.5
Min TPM: 753.2
B_CELL_NAIVE_1
1515.5
B_CELL_NAIVE_2
1467.8
B_CELL_NAIVE_3
1368.0
B_CELL_NAIVE_4
1358.5
B_CELL_NAIVE_5
1345.3
B_CELL_NAIVE_6
1311.5
B_CELL_NAIVE_7
1292.0
B_CELL_NAIVE_8
1274.2
B_CELL_NAIVE_9
1262.6
B_CELL_NAIVE_10
1253.0
B_CELL_NAIVE_11
1218.7
B_CELL_NAIVE_12
1206.8
B_CELL_NAIVE_13
1200.2
B_CELL_NAIVE_14
1198.5
B_CELL_NAIVE_15
1195.8
B_CELL_NAIVE_16
1175.8
B_CELL_NAIVE_17
1122.3
B_CELL_NAIVE_18
1121.6
B_CELL_NAIVE_19
1115.7
B_CELL_NAIVE_20
1110.2
B_CELL_NAIVE_21
1103.5
B_CELL_NAIVE_22
1102.4
B_CELL_NAIVE_23
1102.0
B_CELL_NAIVE_24
1096.4
B_CELL_NAIVE_25
1082.9
B_CELL_NAIVE_26
1077.6
B_CELL_NAIVE_27
1070.8
B_CELL_NAIVE_28
1068.7
B_CELL_NAIVE_29
1060.0
B_CELL_NAIVE_30
1060.0
B_CELL_NAIVE_31
1052.8
B_CELL_NAIVE_32
1052.3
B_CELL_NAIVE_33
1049.7
B_CELL_NAIVE_34
1044.4
B_CELL_NAIVE_35
1043.1
B_CELL_NAIVE_36
1033.8
B_CELL_NAIVE_37
1032.5
B_CELL_NAIVE_38
1029.3
B_CELL_NAIVE_39
1029.2
B_CELL_NAIVE_40
1026.4
B_CELL_NAIVE_41
1026.0
B_CELL_NAIVE_42
1023.4
B_CELL_NAIVE_43
1022.4
B_CELL_NAIVE_44
1021.5
B_CELL_NAIVE_45
1015.5
B_CELL_NAIVE_46
1013.6
B_CELL_NAIVE_47
1011.5
B_CELL_NAIVE_48
1006.6
B_CELL_NAIVE_49
1006.1
B_CELL_NAIVE_50
992.8
B_CELL_NAIVE_51
990.3
B_CELL_NAIVE_52
989.5
B_CELL_NAIVE_53
988.1
B_CELL_NAIVE_54
988.1
B_CELL_NAIVE_55
987.4
B_CELL_NAIVE_56
986.4
B_CELL_NAIVE_57
985.8
B_CELL_NAIVE_58
978.3
B_CELL_NAIVE_59
971.6
B_CELL_NAIVE_60
970.7
B_CELL_NAIVE_61
968.6
B_CELL_NAIVE_62
967.0
B_CELL_NAIVE_63
961.2
B_CELL_NAIVE_64
960.5
B_CELL_NAIVE_65
949.6
B_CELL_NAIVE_66
940.1
B_CELL_NAIVE_67
938.6
B_CELL_NAIVE_68
935.5
B_CELL_NAIVE_69
933.1
B_CELL_NAIVE_70
930.3
B_CELL_NAIVE_71
927.4
B_CELL_NAIVE_72
921.6
B_CELL_NAIVE_73
913.6
B_CELL_NAIVE_74
909.5
B_CELL_NAIVE_75
906.5
B_CELL_NAIVE_76
905.0
B_CELL_NAIVE_77
904.9
B_CELL_NAIVE_78
899.1
B_CELL_NAIVE_79
896.2
B_CELL_NAIVE_80
893.4
B_CELL_NAIVE_81
890.4
B_CELL_NAIVE_82
885.7
B_CELL_NAIVE_83
865.2
B_CELL_NAIVE_84
864.0
B_CELL_NAIVE_85
853.7
B_CELL_NAIVE_86
825.9
B_CELL_NAIVE_87
818.7
B_CELL_NAIVE_88
815.4
B_CELL_NAIVE_89
775.0
B_CELL_NAIVE_90
772.3
B_CELL_NAIVE_91
753.2
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