A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
350.5
nTPM
Monaco:
747.2
nTPM
Schmiedel:
539.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
350.5
HPA sample
nTPM
Classical monocyte nTPM: 231.9
Samples: 6
Max nTPM: 330.3
Min nTPM: 134.9
P10809_1003
328.8
P10809_1020
330.3
P10809_1039
227.1
P10809_1058
180.4
P10809_1080
134.9
P10809_1107
189.6
Intermediate monocyte nTPM: 341.0
Samples: 6
Max nTPM: 501.3
Min nTPM: 214.0
P10809_1004
318.1
P10809_1023
360.1
P10809_1042
351.8
P10809_1061
501.3
P10809_1081
214.0
P10809_1108
300.7
Non-classical monocyte nTPM: 350.5
Samples: 5
Max nTPM: 465.6
Min nTPM: 202.5
P10809_1005
365.3
P10809_1053
350.6
P10809_1072
465.6
P10809_1082
202.5
P10809_1109
368.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
747.2
Monaco sample
nTPM
Classical monocyte nTPM: 495.0
Samples: 4
Max nTPM: 712.0
Min nTPM: 366.1
RHH5313_R3680
366.1
RHH5221_R3593
712.0
RHH5250_R3622
508.7
RHH5279_R3651
393.1
Intermediate monocyte nTPM: 612.9
Samples: 4
Max nTPM: 862.9
Min nTPM: 453.7
RHH5314_R3681
453.7
RHH5222_R3594
862.9
RHH5251_R3623
633.9
RHH5280_R3652
501.1
Non-classical monocyte nTPM: 747.2
Samples: 4
Max nTPM: 1039.9
Min nTPM: 558.7
RHH5315_R3682
558.7
RHH5223_R3595
1039.9
RHH5252_R3624
770.3
RHH5281_R3653
620.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
539.5
Schmiedel sample id
TPM
Classical monocyte TPM: 430.7
Samples: 91
Max TPM: 555.5
Min TPM: 294.5
MONOCYTES_1
555.5
MONOCYTES_2
546.0
MONOCYTES_3
532.8
MONOCYTES_4
511.6
MONOCYTES_5
509.5
MONOCYTES_6
507.0
MONOCYTES_7
500.2
MONOCYTES_8
498.6
MONOCYTES_9
497.8
MONOCYTES_10
494.8
MONOCYTES_11
494.5
MONOCYTES_12
493.7
MONOCYTES_13
492.8
MONOCYTES_14
490.4
MONOCYTES_15
486.3
MONOCYTES_16
485.5
MONOCYTES_17
477.5
MONOCYTES_18
477.0
MONOCYTES_19
476.5
MONOCYTES_20
473.6
MONOCYTES_21
471.6
MONOCYTES_22
466.1
MONOCYTES_23
465.2
MONOCYTES_24
465.1
MONOCYTES_25
465.0
MONOCYTES_26
464.3
MONOCYTES_27
463.9
MONOCYTES_28
458.9
MONOCYTES_29
458.5
MONOCYTES_30
458.1
MONOCYTES_31
456.5
MONOCYTES_32
454.2
MONOCYTES_33
453.4
MONOCYTES_34
443.7
MONOCYTES_35
443.4
MONOCYTES_36
442.6
MONOCYTES_37
440.3
MONOCYTES_38
439.2
MONOCYTES_39
437.9
MONOCYTES_40
433.2
MONOCYTES_41
433.1
MONOCYTES_42
433.0
MONOCYTES_43
432.6
MONOCYTES_44
431.5
MONOCYTES_45
430.9
MONOCYTES_46
427.3
MONOCYTES_47
426.4
MONOCYTES_48
426.0
MONOCYTES_49
425.5
MONOCYTES_50
421.2
MONOCYTES_51
419.9
MONOCYTES_52
419.7
MONOCYTES_53
418.4
MONOCYTES_54
416.4
MONOCYTES_55
416.3
MONOCYTES_56
416.0
MONOCYTES_57
415.1
MONOCYTES_58
410.5
MONOCYTES_59
410.5
MONOCYTES_60
410.5
MONOCYTES_61
409.9
MONOCYTES_62
408.8
MONOCYTES_63
408.1
MONOCYTES_64
405.8
MONOCYTES_65
403.6
MONOCYTES_66
401.9
MONOCYTES_67
393.9
MONOCYTES_68
393.0
MONOCYTES_69
392.8
MONOCYTES_70
392.5
MONOCYTES_71
392.3
MONOCYTES_72
388.2
MONOCYTES_73
388.0
MONOCYTES_74
385.0
MONOCYTES_75
383.7
MONOCYTES_76
382.0
MONOCYTES_77
377.7
MONOCYTES_78
374.0
MONOCYTES_79
374.0
MONOCYTES_80
373.5
MONOCYTES_81
371.7
MONOCYTES_82
370.9
MONOCYTES_83
368.0
MONOCYTES_84
367.1
MONOCYTES_85
360.8
MONOCYTES_86
359.7
MONOCYTES_87
356.3
MONOCYTES_88
340.1
MONOCYTES_89
339.8
MONOCYTES_90
308.8
MONOCYTES_91
294.5
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Non-classical monocyte TPM: 539.5
Samples: 90
Max TPM: 748.3
Min TPM: 377.2
M2_1
748.3
M2_2
709.4
M2_3
701.6
M2_4
696.2
M2_5
677.9
M2_6
661.4
M2_7
658.0
M2_8
637.3
M2_9
633.3
M2_10
632.3
M2_11
611.7
M2_12
608.0
M2_13
607.0
M2_14
606.9
M2_15
602.3
M2_16
592.2
M2_17
589.1
M2_18
588.8
M2_19
586.4
M2_20
585.0
M2_21
583.4
M2_22
582.0
M2_23
581.1
M2_24
580.1
M2_25
576.4
M2_26
575.5
M2_27
575.2
M2_28
573.0
M2_29
571.1
M2_30
569.8
M2_31
568.0
M2_32
566.3
M2_33
566.1
M2_34
561.5
M2_35
551.4
M2_36
550.5
M2_37
547.0
M2_38
545.2
M2_39
543.6
M2_40
538.0
M2_41
537.7
M2_42
537.0
M2_43
536.6
M2_44
534.6
M2_45
533.4
M2_46
532.8
M2_47
532.7
M2_48
529.5
M2_49
528.6
M2_50
527.3
M2_51
525.1
M2_52
524.6
M2_53
522.5
M2_54
520.4
M2_55
518.4
M2_56
518.3
M2_57
514.1
M2_58
513.6
M2_59
513.4
M2_60
510.6
M2_61
509.8
M2_62
504.3
M2_63
501.6
M2_64
489.8
M2_65
488.2
M2_66
487.4
M2_67
485.6
M2_68
484.7
M2_69
484.5
M2_70
480.8
M2_71
480.3
M2_72
480.0
M2_73
478.7
M2_74
475.6
M2_75
473.9
M2_76
473.8
M2_77
473.4
M2_78
472.5
M2_79
467.7
M2_80
463.8
M2_81
456.9
M2_82
456.6
M2_83
452.5
M2_84
445.7
M2_85
444.6
M2_86
436.3
M2_87
431.1
M2_88
423.6
M2_89
421.0
M2_90
377.2
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