MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.4 nTPM
HPA Brain:53.8 nTPM
GTEx:80.4 nTPM
FANTOM5:370.8 Scaled Tags Per Million
Pig:87.5 nTPM
Mouse:26.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
2666 Male, age 74, left hemisphere 60.2
1870 Female, age 42, unknown 56.9
1830 Male, age 51, unknown 49.4
1833 Male, age 53, unknown 49.0
2219 Male, age 76, both hemispheres 46.0
2828 Female, age 72, unknown 45.9
2411 Female, age 72, unknown 45.0
2019 Male, age 18, unknown 44.4
2586 Male, age 75, left hemisphere 43.5
1827 Male, age 72, unknown 42.9
Dorsal raphe nucleus
nTPM: 44.3
1828 Male, age 53, unknown 47.4
2016 Female, age 72, unknown 46.4
2298 Female, age 72, unknown 43.2
2750 Male, age 76, both hemispheres 42.8
2047 Male, age 72, unknown 41.7
Inferior colliculus
nTPM: 47.3
2849 Male, age 72, unknown 55.3
1890 Male, age 53, unknown 47.1
1848 Female, age 42, unknown 44.7
2097 Female, age 72, unknown 42.1
Median raphe nucleus
nTPM: 47.2
2220 Male, age 76, midline 47.2
Periaquaductal grey, anterior
nTPM: 42.9
2502 Female, age 75, unknown 50.4
1947 Male, age 18, unknown 40.3
1795 Male, age 51, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 53.8
2850 Male, age 76, both hemispheres 64.0
2464 Female, age 72, unknown 54.1
1840 Male, age 53, unknown 50.4
1831 Male, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 41.2
2140 Male, age 76, both hemispheres 47.6
2053 Male, age 18, unknown 46.4
2272 Male, age 74, both hemispheres 29.6
Pretectal area
nTPM: 43.8
1815 Male, age 53, unknown 48.5
2825 Male, age 18, unknown 47.9
1817 Female, age 42, unknown 47.4
2007 Male, age 72, unknown 45.1
2224 Female, age 72, unknown 44.7
1816 Male, age 51, unknown 43.4
2316 Male, age 76, right hemisphere 43.2
2407 Male, age 75, both hemispheres 42.0
1944 Female, age 72, unknown 41.4
2273 Male, age 74, both hemispheres 39.6
2667 Female, age 75, unknown 38.6
Red nucleus
nTPM: 53.8
2503 Female, age 72, unknown 64.6
1821 Female, age 72, unknown 59.8
1865 Male, age 51, unknown 58.6
2725 Female, age 75, unknown 55.8
1954 Female, age 42, unknown 54.2
2769 Male, age 72, unknown 54.1
1904 Male, age 53, unknown 53.5
2227 Male, age 72, unknown 50.7
2584 Male, age 75, left hemisphere 50.0
2588 Male, age 74, left hemisphere 50.0
2823 Male, age 76, right hemisphere 48.8
2785 Male, age 18, unknown 45.8
Substantia nigra
nTPM: 44.8
2699 Male, age 18, unknown 52.4
2665 Male, age 74, both hemispheres 51.5
1889 Female, age 72, unknown 46.1
2241 Male, age 72, unknown 45.0
1941 Male, age 53, unknown 44.1
2409 Female, age 72, unknown 43.4
1851 Male, age 51, unknown 43.3
2590 Female, age 75, unknown 42.7
2583 Male, age 75, right hemisphere 40.7
1916 Female, age 42, unknown 38.4
Superior colliculus
nTPM: 46.7
1995 Male, age 72, unknown 53.9
1913 Female, age 42, unknown 53.6
2587 Male, age 74, left hemisphere 51.5
1839 Male, age 51, unknown 46.6
1895 Male, age 76, right hemisphere 46.3
2668 Female, age 75, unknown 44.7
2087 Female, age 72, unknown 44.3
2664 Male, age 75, both hemispheres 42.8
2261 Male, age 18, unknown 41.9
1796 Male, age 53, unknown 41.8
Ventral tegmental area
nTPM: 43.7
2223 Female, age 72, unknown 51.5
1942 Male, age 51, unknown 44.9
2021 Male, age 53, unknown 43.0
2410 Female, age 72, unknown 41.2
1915 Female, age 42, unknown 40.9
2218 Male, age 76, both hemispheres 40.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.4
Samples: 183

Max nTPM: 195.1
Min nTPM: 36.4
Std nTPM: 26.1
Median nTPM: 75.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 195.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 167.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 160.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 142.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 136.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 135.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 134.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 133.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 132.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 130.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 129.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 370.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 370.8
FF:10158-103A5 76 years, female 370.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.6
Samples: 4

Max nTPM: 94.9
Min nTPM: 72.6
Sample A Female 73.9
Sample B Female 72.6
Sample C Male 80.9
Sample D Male 94.9
Midbrain
nTPM: 87.5
Samples: 4

Max nTPM: 130.7
Min nTPM: 62.6
Sample A Female 130.7
Sample B Female 88.9
Sample C Male 67.8
Sample D Male 62.6
Periaqueductal gray
nTPM: 83.3
Samples: 3

Max nTPM: 86.3
Min nTPM: 81.2
Sample B Female 82.3
Sample C Male 86.3
Sample D Male 81.2
Superior colliculi
nTPM: 70.6
Samples: 4

Max nTPM: 85.2
Min nTPM: 51.4
Sample A Female 73.6
Sample B Female 51.4
Sample C Male 72.3
Sample D Male 85.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 24.1
Sample A Male 26.3
Sample B Male 26.5
Sample C Female 28.1
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70608547 Antisense, RP_050630_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo