A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
9.2
nTPM
Schmiedel:
41.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
NK-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.0
P10809_1013
1.5
P10809_1033
0.5
P10809_1052
1.2
P10809_1071
1.1
P10809_1093
0.0
P10809_1103
0.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.2
Monaco sample
nTPM
NK-cell nTPM: 9.3
Samples: 4
Max nTPM: 11.2
Min nTPM: 7.6
RHH5316_R3683
11.2
RHH5224_R3596
7.6
RHH5253_R3625
9.5
RHH5282_R3654
8.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.1
Schmiedel sample id
TPM
NK-cell TPM: 41.1
Samples: 90
Max TPM: 68.6
Min TPM: 21.1
NK_1
68.6
NK_2
67.9
NK_3
67.7
NK_4
67.2
NK_5
63.5
NK_6
58.1
NK_7
58.1
NK_8
55.4
NK_9
54.3
NK_10
54.0
NK_11
53.5
NK_12
53.0
NK_13
52.9
NK_14
52.1
NK_15
51.9
NK_16
50.2
NK_17
49.4
NK_18
49.4
NK_19
48.8
NK_20
48.8
NK_21
48.1
NK_22
47.8
NK_23
46.9
NK_24
46.5
NK_25
45.9
NK_26
45.3
NK_27
45.3
NK_28
44.9
NK_29
44.6
NK_30
44.4
NK_31
44.2
NK_32
43.8
NK_33
42.9
NK_34
42.9
NK_35
42.4
NK_36
42.0
NK_37
41.6
NK_38
41.5
NK_39
41.4
NK_40
41.3
NK_41
41.2
NK_42
41.2
NK_43
41.0
NK_44
40.9
NK_45
40.1
NK_46
40.1
NK_47
39.8
NK_48
39.5
NK_49
39.2
NK_50
39.2
NK_51
38.9
NK_52
38.2
NK_53
37.6
NK_54
37.6
NK_55
37.3
NK_56
37.3
NK_57
37.1
NK_58
36.9
NK_59
36.5
NK_60
35.9
NK_61
35.8
NK_62
35.5
NK_63
35.4
NK_64
35.4
NK_65
34.7
NK_66
34.7
NK_67
34.4
NK_68
34.4
NK_69
34.1
NK_70
34.0
NK_71
33.9
NK_72
33.9
NK_73
32.7
NK_74
32.2
NK_75
31.4
NK_76
31.3
NK_77
31.2
NK_78
30.8
NK_79
29.7
NK_80
27.7
NK_81
26.9
NK_82
26.9
NK_83
26.8
NK_84
25.9
NK_85
25.8
NK_86
25.7
NK_87
25.0
NK_88
24.7
NK_89
21.8
NK_90
21.1
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