A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
12.9
nTPM
Schmiedel:
23.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.3
P10809_1003
1.0
P10809_1020
0.6
P10809_1039
0.7
P10809_1058
0.3
P10809_1080
0.7
P10809_1107
0.5
Intermediate monocyte nTPM: 0.4
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1004
0.6
P10809_1023
0.0
P10809_1042
1.0
P10809_1061
0.0
P10809_1081
0.2
P10809_1108
0.5
Non-classical monocyte nTPM: 1.7
Samples: 5
Max nTPM: 6.6
Min nTPM: 0.2
P10809_1005
0.6
P10809_1053
0.2
P10809_1072
6.6
P10809_1082
0.4
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Monaco sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 18.8
Min nTPM: 6.3
RHH5313_R3680
8.7
RHH5221_R3593
18.8
RHH5250_R3622
6.3
RHH5279_R3651
6.7
Intermediate monocyte nTPM: 12.9
Samples: 4
Max nTPM: 18.6
Min nTPM: 8.2
RHH5314_R3681
8.2
RHH5222_R3594
18.6
RHH5251_R3623
14.5
RHH5280_R3652
10.4
Non-classical monocyte nTPM: 8.5
Samples: 4
Max nTPM: 10.8
Min nTPM: 5.7
RHH5315_R3682
5.7
RHH5223_R3595
10.8
RHH5252_R3624
9.7
RHH5281_R3653
7.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
Schmiedel sample id
TPM
Classical monocyte TPM: 23.5
Samples: 91
Max TPM: 30.8
Min TPM: 13.4
MONOCYTES_1
30.8
MONOCYTES_2
30.2
MONOCYTES_3
29.9
MONOCYTES_4
29.3
MONOCYTES_5
29.1
MONOCYTES_6
28.9
MONOCYTES_7
28.4
MONOCYTES_8
28.3
MONOCYTES_9
28.2
MONOCYTES_10
28.1
MONOCYTES_11
28.1
MONOCYTES_12
27.9
MONOCYTES_13
27.7
MONOCYTES_14
27.3
MONOCYTES_15
27.2
MONOCYTES_16
27.2
MONOCYTES_17
26.8
MONOCYTES_18
26.7
MONOCYTES_19
26.7
MONOCYTES_20
26.6
MONOCYTES_21
26.6
MONOCYTES_22
26.3
MONOCYTES_23
26.2
MONOCYTES_24
25.9
MONOCYTES_25
25.8
MONOCYTES_26
25.7
MONOCYTES_27
25.6
MONOCYTES_28
25.6
MONOCYTES_29
25.5
MONOCYTES_30
25.3
MONOCYTES_31
25.0
MONOCYTES_32
25.0
MONOCYTES_33
25.0
MONOCYTES_34
24.7
MONOCYTES_35
24.7
MONOCYTES_36
24.7
MONOCYTES_37
24.6
MONOCYTES_38
24.5
MONOCYTES_39
24.3
MONOCYTES_40
24.2
MONOCYTES_41
24.0
MONOCYTES_42
23.9
MONOCYTES_43
23.8
MONOCYTES_44
23.7
MONOCYTES_45
23.3
MONOCYTES_46
23.3
MONOCYTES_47
23.1
MONOCYTES_48
23.1
MONOCYTES_49
23.1
MONOCYTES_50
22.9
MONOCYTES_51
22.8
MONOCYTES_52
22.8
MONOCYTES_53
22.8
MONOCYTES_54
22.8
MONOCYTES_55
22.8
MONOCYTES_56
22.7
MONOCYTES_57
22.7
MONOCYTES_58
22.6
MONOCYTES_59
22.4
MONOCYTES_60
22.3
MONOCYTES_61
22.1
MONOCYTES_62
21.9
MONOCYTES_63
21.8
MONOCYTES_64
21.5
MONOCYTES_65
21.1
MONOCYTES_66
21.1
MONOCYTES_67
21.0
MONOCYTES_68
20.9
MONOCYTES_69
20.8
MONOCYTES_70
20.7
MONOCYTES_71
20.4
MONOCYTES_72
20.4
MONOCYTES_73
20.3
MONOCYTES_74
20.3
MONOCYTES_75
20.2
MONOCYTES_76
20.1
MONOCYTES_77
19.5
MONOCYTES_78
19.5
MONOCYTES_79
19.3
MONOCYTES_80
19.2
MONOCYTES_81
18.9
MONOCYTES_82
18.9
MONOCYTES_83
18.8
MONOCYTES_84
18.5
MONOCYTES_85
18.5
MONOCYTES_86
18.2
MONOCYTES_87
17.6
MONOCYTES_88
17.6
MONOCYTES_89
17.4
MONOCYTES_90
15.0
MONOCYTES_91
13.4
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Non-classical monocyte TPM: 22.7
Samples: 90
Max TPM: 30.8
Min TPM: 15.1
M2_1
30.8
M2_2
30.7
M2_3
29.3
M2_4
28.7
M2_5
28.1
M2_6
27.8
M2_7
27.7
M2_8
27.4
M2_9
27.2
M2_10
27.1
M2_11
26.4
M2_12
26.1
M2_13
26.0
M2_14
26.0
M2_15
25.8
M2_16
25.7
M2_17
25.7
M2_18
25.7
M2_19
25.6
M2_20
25.6
M2_21
25.5
M2_22
25.4
M2_23
25.2
M2_24
25.2
M2_25
25.0
M2_26
25.0
M2_27
25.0
M2_28
24.9
M2_29
24.7
M2_30
24.6
M2_31
24.6
M2_32
24.5
M2_33
24.5
M2_34
24.2
M2_35
24.0
M2_36
24.0
M2_37
23.9
M2_38
23.4
M2_39
23.4
M2_40
23.4
M2_41
23.4
M2_42
23.2
M2_43
23.1
M2_44
23.1
M2_45
23.0
M2_46
22.9
M2_47
22.9
M2_48
22.9
M2_49
22.6
M2_50
22.6
M2_51
22.5
M2_52
22.5
M2_53
21.9
M2_54
21.6
M2_55
21.6
M2_56
21.4
M2_57
21.4
M2_58
21.3
M2_59
21.2
M2_60
21.2
M2_61
21.1
M2_62
20.8
M2_63
20.7
M2_64
20.4
M2_65
20.4
M2_66
20.3
M2_67
20.1
M2_68
20.0
M2_69
20.0
M2_70
19.8
M2_71
19.8
M2_72
19.7
M2_73
19.6
M2_74
19.4
M2_75
19.3
M2_76
19.2
M2_77
19.0
M2_78
18.3
M2_79
18.1
M2_80
17.8
M2_81
17.7
M2_82
17.6
M2_83
17.6
M2_84
17.2
M2_85
16.6
M2_86
16.2
M2_87
15.9
M2_88
15.5
M2_89
15.2
M2_90
15.1
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