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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:78.2 nTPM
HPA Brain:93.8 nTPM
GTEx:78.2 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:352.0 nTPM
Allen mouse:15.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.8
Sample id Sample description nTPM
Amygdala
nTPM: 89.7
2814 Male, age 76, right hemisphere 144.5
1987 Female, age 91, left hemisphere 95.4
2517 Female, age 94, left hemisphere 79.2
2695 Female, age 67, right hemisphere 65.1
2514 Male, age 75, right hemisphere 64.3
Basal amygdala
nTPM: 93.8
2243 Female, age 91, right hemisphere 124.2
2110 Male, age 80, left hemisphere 117.9
2685 Female, age 94, left hemisphere 103.4
1955 Male, age 76, both hemispheres 99.1
2827 Female, age 67, right hemisphere 62.9
2609 Male, age 75, right hemisphere 55.4
Central amygdala
nTPM: 90.8
1905 Male, age 76, both hemispheres 131.6
2239 Male, age 80, left hemisphere 97.6
2701 Female, age 91, right hemisphere 85.8
2826 Female, age 94, left hemisphere 85.4
2515 Male, age 75, right hemisphere 53.6
Corticomedial amygdala
nTPM: 92.3
2829 Male, age 80, left hemisphere 115.3
2535 Female, age 67, right hemisphere 104.3
2242 Female, age 91, right hemisphere 102.8
2429 Female, age 94, left hemisphere 90.9
2240 Male, age 76, both hemispheres 90.6
2428 Male, age 75, right hemisphere 50.1
Lateral amygdala
nTPM: 84.4
1883 Male, age 76, both hemispheres 132.8
2534 Female, age 94, left hemisphere 126.6
2255 Female, age 91, right hemisphere 83.4
2256 Male, age 80, left hemisphere 60.6
2516 Male, age 75, right hemisphere 52.0
2830 Female, age 67, right hemisphere 50.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 78.2
Samples: 181

Max nTPM: 271.7
Min nTPM: 17.0
Std nTPM: 43.8
Median nTPM: 69.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 219.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 213.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 204.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 198.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 169.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 157.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 157.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 155.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 154.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 152.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 149.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 147.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 143.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 143.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 140.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 140.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 139.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 139.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 138.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 134.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 134.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 133.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 133.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 132.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 131.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 118.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 115.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 114.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 114.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 113.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 112.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 108.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 105.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 103.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 102.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 102.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 102.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 100.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 99.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 99.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 95.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 91.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 90.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 89.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 85.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 85.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 81.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 80.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 79.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 79.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 78.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 78.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 78.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 78.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 77.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 77.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 74.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 74.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 72.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 72.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 71.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 71.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 70.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 70.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 69.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 66.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 66.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 66.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 65.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 64.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 64.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 64.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 64.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 63.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 60.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 60.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 59.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 58.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 58.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 57.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 54.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 54.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 54.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 54.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 53.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 52.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 52.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 50.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 49.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 49.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 49.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 48.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 48.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 45.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 44.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 44.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 44.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 44.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 43.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 43.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 43.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 42.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 42.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 41.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 41.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 41.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 40.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 40.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 40.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 39.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 38.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 37.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 36.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 35.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 33.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 32.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 32.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 32.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 32.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 31.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 26.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 24.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 24.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 23.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 23.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 23.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 22.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 21.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 17.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 17.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 51.7
FF:10151-102I7 76 years, female 51.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.4
Pig sample Sample description nTPM
Amygdala
nTPM: 52.4
Samples: 4

Max nTPM: 79.4
Min nTPM: 34.1
Sample A Female 79.4
Sample B Female 34.1
Sample C Male 46.9
Sample D Male 49.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 352.0
Samples: 4

Max nTPM: 384.6
Min nTPM: 331.2
Sample A Male 384.6
Sample B Male 356.0
Sample C Female 331.2
Sample D Female 336.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.9
146 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 15.9
145 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 15.2

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