On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
33.9
nTPM
HPA Brain:
47.1
nTPM
GTEx:
33.9
nTPM
FANTOM5:
29.0
Scaled Tags Per Million
Macaque:
53.5
nTPM
Rat:
40.6
nTPM
Pig:
82.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
5379
Sample
Intensity
Spinal cord_01
53712
Spinal cord_02
10640
Spinal cord_03
5613
Spinal cord_04
5146
Spinal cord_05
4672
Spinal cord_06
9309
Spinal cord_07
3846
Spinal cord_08
4734
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.1
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 39.6
2818
Female, age 79, both hemispheres
43.7
2819
Male, age 47, both hemispheres
40.4
2193
Male, age 75, both hemispheres
39.5
2734
Male, age 80, both hemispheres
34.7
Cervical spinal cord, central gray nTPM: 38.1
2048
Male, age 55, midline
50.1
1981
Female, age 72, midline
42.6
2816
Male, age 47, midline
37.4
2194
Female, age 79, both hemispheres
31.5
2565
Male, age 75, midline
29.0
Cervical spinal cord, dorsal horn nTPM: 39.1
2296
Male, age 66, both hemispheres
56.2
2173
Female, age 72, unknown
46.9
2069
Male, age 47, both hemispheres
38.9
1877
Male, age 55, unknown
38.0
2297
Male, age 75, both hemispheres
29.9
2721
Male, age 90, both hemispheres
24.5
Cervical spinal cord, ventral horn nTPM: 33.5
2098
Female, age 72, unknown
50.5
2068
Male, age 55, unknown
33.1
2809
Male, age 90, both hemispheres
31.5
2480
Male, age 75, both hemispheres
29.7
2295
Male, age 66, both hemispheres
29.2
2820
Female, age 79, both hemispheres
26.8
Dorsal funiculus (white matter) nTPM: 47.1
2064
Female, age 79, both hemispheres
54.4
2810
Male, age 90, both hemispheres
54.3
2817
Male, age 47, both hemispheres
44.2
2812
Male, age 66, both hemispheres
43.4
2128
Male, age 75, both hemispheres
39.3
Lateral funiculus (white matter) nTPM: 42.4
2099
Male, age 90, both hemispheres
56.2
2094
Female, age 79, both hemispheres
49.3
2294
Male, age 66, both hemispheres
33.2
2192
Male, age 75, both hemispheres
30.7
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.9
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 33.9
Samples: 204
Max nTPM: 57.3
Min nTPM: 13.1
Std nTPM: 8.6
Median nTPM: 33.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
57.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
54.9
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
54.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
52.9
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
52.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
51.7
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
51.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
50.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
49.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
49.2
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
48.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
48.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
48.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
47.0
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
46.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
46.4
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
45.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
45.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
45.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
45.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
44.3
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
44.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
43.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
43.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
43.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
43.4
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
42.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
42.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
42.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
42.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
41.9
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
41.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
41.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
41.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
41.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
41.2
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
41.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
40.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
40.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
40.9
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
40.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
40.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
40.3
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
40.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
40.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
40.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
39.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
39.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
39.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
39.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
39.1
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
39.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
38.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
38.8
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
38.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
38.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
38.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
38.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
38.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
38.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
38.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
38.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
38.4
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
38.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
38.1
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
38.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
37.8
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
37.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
37.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
37.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
37.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
37.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
37.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
37.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
37.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
37.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
37.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
37.0
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
36.9
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
36.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
36.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
36.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
36.6
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
36.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
36.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
36.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
36.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
36.2
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
36.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
35.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
35.8
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
35.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
35.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
35.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
34.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
34.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
34.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
34.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
34.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
34.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
34.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
33.9
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
33.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
33.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
33.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
33.7
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
33.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
33.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
33.5
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
33.3
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
33.3
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
33.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
33.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
33.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
32.9
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
32.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
32.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
32.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
32.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
32.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
32.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
32.0
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
31.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
31.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
31.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
31.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
31.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
31.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
31.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
31.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
31.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
31.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
31.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
30.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
30.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
30.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
30.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
30.8
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
30.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
30.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
30.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
30.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
30.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
30.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
30.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
29.3
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
29.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
28.8
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
28.6
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
28.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
28.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
28.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
27.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
27.4
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
27.3
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
27.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
26.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
26.8
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
26.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
26.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
26.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
26.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
26.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
25.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
25.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
25.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
25.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
24.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
24.7
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
24.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
24.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
24.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
24.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
24.0
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
24.0
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
23.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
23.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
23.8
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
23.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
23.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
23.3
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
23.0
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
22.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
22.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
22.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
22.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
22.0
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
21.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
21.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
21.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
21.0
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
20.6
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
19.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
19.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
18.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
17.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
17.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
16.8
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
16.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
16.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
14.9
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
14.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
14.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
13.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.5
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 53.6
Samples: 2
Max nTPM: 61.1
Min nTPM: 46.0
Sample A
61.1
Sample B
46.0
Ventral spinal cord nTPM: 40.1
Samples: 1
Max nTPM: 40.1
Min nTPM: 40.1
Sample A
40.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 65.3
Samples: 4
Max nTPM: 76.8
Min nTPM: 53.4
Sample A
Female
63.1
Sample B
Female
76.8
Sample C
Male
53.4
Sample D
Male
67.9
Ventral spinal cord nTPM: 82.6
Samples: 4
Max nTPM: 112.4
Min nTPM: 59.1
Sample A
Female
78.0
Sample B
Female
80.8
Sample C
Male
59.1
Sample D
Male
112.4
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 40.6
Samples: 4
Max nTPM: 44.5
Min nTPM: 34.9
Sample A
43.5
Sample A
44.5
Sample A
39.5
Sample A
34.9
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The Human Protein Atlas project is funded
