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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • PSMD8
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:171.0 nTPM
Monaco:291.1 nTPM
Schmiedel:44.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

171.0
HPA sample nTPM
Memory B-cell
nTPM: 171.0
Samples: 6

Max nTPM: 208.0
Min nTPM: 141.5
P10809_1017 159.9
P10809_1025 185.3
P10809_1044 208.0
P10809_1063 141.5
P10809_1092 169.0
P10809_1105 162.5
Naive B-cell
nTPM: 169.6
Samples: 6

Max nTPM: 397.2
Min nTPM: 90.2
P10809_1011 90.2
P10809_1029 137.1
P10809_1048 397.2
P10809_1067 104.8
P10809_1091 144.3
P10809_1104 144.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

291.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 153.1
Samples: 4

Max nTPM: 209.6
Min nTPM: 88.9
RHH5310_R3677 209.6
RHH5218_R3590 150.5
RHH5247_R3619 163.4
RHH5276_R3648 88.9
Naive B-cell
nTPM: 102.5
Samples: 4

Max nTPM: 130.4
Min nTPM: 76.1
RHH5308_R3675 130.4
RHH5216_R3588 117.8
RHH5245_R3617 76.1
RHH5274_R3646 85.8
Non-switched memory B-cell
nTPM: 117.8
Samples: 4

Max nTPM: 136.5
Min nTPM: 76.6
RHH5309_R3676 136.5
RHH5217_R3589 123.3
RHH5246_R3618 134.9
RHH5275_R3647 76.6
Plasmablast
nTPM: 291.1
Samples: 4

Max nTPM: 313.7
Min nTPM: 256.0
RHH5312_R3679 283.9
RHH5220_R3592 310.8
RHH5249_R3621 313.7
RHH5278_R3650 256.0
Switched memory B-cell
nTPM: 139.1
Samples: 4

Max nTPM: 220.0
Min nTPM: 91.8
RHH5311_R3678 220.0
RHH5219_R3591 141.6
RHH5248_R3620 102.9
RHH5277_R3649 91.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

44.4
Schmiedel sample id TPM
Naive B-cell
TPM: 44.4
Samples: 91

Max TPM: 59.1
Min TPM: 13.6
B_CELL_NAIVE_1 59.1
B_CELL_NAIVE_2 58.4
B_CELL_NAIVE_3 56.3
B_CELL_NAIVE_4 56.1
B_CELL_NAIVE_5 55.6
B_CELL_NAIVE_6 55.6
B_CELL_NAIVE_7 55.3
B_CELL_NAIVE_8 55.0
B_CELL_NAIVE_9 54.7
B_CELL_NAIVE_10 54.0
B_CELL_NAIVE_11 52.9
B_CELL_NAIVE_12 52.2
B_CELL_NAIVE_13 52.0
B_CELL_NAIVE_14 51.5
B_CELL_NAIVE_15 51.1
B_CELL_NAIVE_16 51.0
B_CELL_NAIVE_17 50.9
B_CELL_NAIVE_18 50.9
B_CELL_NAIVE_19 50.8
B_CELL_NAIVE_20 50.2
B_CELL_NAIVE_21 50.2
B_CELL_NAIVE_22 50.1
B_CELL_NAIVE_23 50.1
B_CELL_NAIVE_24 49.8
B_CELL_NAIVE_25 49.6
B_CELL_NAIVE_26 49.5
B_CELL_NAIVE_27 49.5
B_CELL_NAIVE_28 49.5
B_CELL_NAIVE_29 49.4
B_CELL_NAIVE_30 49.0
B_CELL_NAIVE_31 49.0
B_CELL_NAIVE_32 48.7
B_CELL_NAIVE_33 48.5
B_CELL_NAIVE_34 48.4
B_CELL_NAIVE_35 48.4
B_CELL_NAIVE_36 48.2
B_CELL_NAIVE_37 48.0
B_CELL_NAIVE_38 47.9
B_CELL_NAIVE_39 47.9
B_CELL_NAIVE_40 47.8
B_CELL_NAIVE_41 47.6
B_CELL_NAIVE_42 47.1
B_CELL_NAIVE_43 46.6
B_CELL_NAIVE_44 46.3
B_CELL_NAIVE_45 46.1
B_CELL_NAIVE_46 45.8
B_CELL_NAIVE_47 45.8
B_CELL_NAIVE_48 45.6
B_CELL_NAIVE_49 45.4
B_CELL_NAIVE_50 45.4
B_CELL_NAIVE_51 45.2
B_CELL_NAIVE_52 45.1
B_CELL_NAIVE_53 45.1
B_CELL_NAIVE_54 44.9
B_CELL_NAIVE_55 44.7
B_CELL_NAIVE_56 44.4
B_CELL_NAIVE_57 44.4
B_CELL_NAIVE_58 44.3
B_CELL_NAIVE_59 44.1
B_CELL_NAIVE_60 44.0
B_CELL_NAIVE_61 43.8
B_CELL_NAIVE_62 43.5
B_CELL_NAIVE_63 43.3
B_CELL_NAIVE_64 43.3
B_CELL_NAIVE_65 43.3
B_CELL_NAIVE_66 40.8
B_CELL_NAIVE_67 40.1
B_CELL_NAIVE_68 40.1
B_CELL_NAIVE_69 39.7
B_CELL_NAIVE_70 39.6
B_CELL_NAIVE_71 39.3
B_CELL_NAIVE_72 39.1
B_CELL_NAIVE_73 38.9
B_CELL_NAIVE_74 38.7
B_CELL_NAIVE_75 38.2
B_CELL_NAIVE_76 38.1
B_CELL_NAIVE_77 37.6
B_CELL_NAIVE_78 36.9
B_CELL_NAIVE_79 36.7
B_CELL_NAIVE_80 35.5
B_CELL_NAIVE_81 35.3
B_CELL_NAIVE_82 34.0
B_CELL_NAIVE_83 31.4
B_CELL_NAIVE_84 29.0
B_CELL_NAIVE_85 28.9
B_CELL_NAIVE_86 26.0
B_CELL_NAIVE_87 23.2
B_CELL_NAIVE_88 21.9
B_CELL_NAIVE_89 19.7
B_CELL_NAIVE_90 19.7
B_CELL_NAIVE_91 13.6
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