A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
171.0
nTPM
Monaco:
291.1
nTPM
Schmiedel:
44.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.0
HPA sample
nTPM
Memory B-cell nTPM: 171.0
Samples: 6
Max nTPM: 208.0
Min nTPM: 141.5
P10809_1017
159.9
P10809_1025
185.3
P10809_1044
208.0
P10809_1063
141.5
P10809_1092
169.0
P10809_1105
162.5
Naive B-cell nTPM: 169.6
Samples: 6
Max nTPM: 397.2
Min nTPM: 90.2
P10809_1011
90.2
P10809_1029
137.1
P10809_1048
397.2
P10809_1067
104.8
P10809_1091
144.3
P10809_1104
144.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
291.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 153.1
Samples: 4
Max nTPM: 209.6
Min nTPM: 88.9
RHH5310_R3677
209.6
RHH5218_R3590
150.5
RHH5247_R3619
163.4
RHH5276_R3648
88.9
Naive B-cell nTPM: 102.5
Samples: 4
Max nTPM: 130.4
Min nTPM: 76.1
RHH5308_R3675
130.4
RHH5216_R3588
117.8
RHH5245_R3617
76.1
RHH5274_R3646
85.8
Non-switched memory B-cell nTPM: 117.8
Samples: 4
Max nTPM: 136.5
Min nTPM: 76.6
RHH5309_R3676
136.5
RHH5217_R3589
123.3
RHH5246_R3618
134.9
RHH5275_R3647
76.6
Plasmablast nTPM: 291.1
Samples: 4
Max nTPM: 313.7
Min nTPM: 256.0
RHH5312_R3679
283.9
RHH5220_R3592
310.8
RHH5249_R3621
313.7
RHH5278_R3650
256.0
Switched memory B-cell nTPM: 139.1
Samples: 4
Max nTPM: 220.0
Min nTPM: 91.8
RHH5311_R3678
220.0
RHH5219_R3591
141.6
RHH5248_R3620
102.9
RHH5277_R3649
91.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.4
Schmiedel sample id
TPM
Naive B-cell TPM: 44.4
Samples: 91
Max TPM: 59.1
Min TPM: 13.6
B_CELL_NAIVE_1
59.1
B_CELL_NAIVE_2
58.4
B_CELL_NAIVE_3
56.3
B_CELL_NAIVE_4
56.1
B_CELL_NAIVE_5
55.6
B_CELL_NAIVE_6
55.6
B_CELL_NAIVE_7
55.3
B_CELL_NAIVE_8
55.0
B_CELL_NAIVE_9
54.7
B_CELL_NAIVE_10
54.0
B_CELL_NAIVE_11
52.9
B_CELL_NAIVE_12
52.2
B_CELL_NAIVE_13
52.0
B_CELL_NAIVE_14
51.5
B_CELL_NAIVE_15
51.1
B_CELL_NAIVE_16
51.0
B_CELL_NAIVE_17
50.9
B_CELL_NAIVE_18
50.9
B_CELL_NAIVE_19
50.8
B_CELL_NAIVE_20
50.2
B_CELL_NAIVE_21
50.2
B_CELL_NAIVE_22
50.1
B_CELL_NAIVE_23
50.1
B_CELL_NAIVE_24
49.8
B_CELL_NAIVE_25
49.6
B_CELL_NAIVE_26
49.5
B_CELL_NAIVE_27
49.5
B_CELL_NAIVE_28
49.5
B_CELL_NAIVE_29
49.4
B_CELL_NAIVE_30
49.0
B_CELL_NAIVE_31
49.0
B_CELL_NAIVE_32
48.7
B_CELL_NAIVE_33
48.5
B_CELL_NAIVE_34
48.4
B_CELL_NAIVE_35
48.4
B_CELL_NAIVE_36
48.2
B_CELL_NAIVE_37
48.0
B_CELL_NAIVE_38
47.9
B_CELL_NAIVE_39
47.9
B_CELL_NAIVE_40
47.8
B_CELL_NAIVE_41
47.6
B_CELL_NAIVE_42
47.1
B_CELL_NAIVE_43
46.6
B_CELL_NAIVE_44
46.3
B_CELL_NAIVE_45
46.1
B_CELL_NAIVE_46
45.8
B_CELL_NAIVE_47
45.8
B_CELL_NAIVE_48
45.6
B_CELL_NAIVE_49
45.4
B_CELL_NAIVE_50
45.4
B_CELL_NAIVE_51
45.2
B_CELL_NAIVE_52
45.1
B_CELL_NAIVE_53
45.1
B_CELL_NAIVE_54
44.9
B_CELL_NAIVE_55
44.7
B_CELL_NAIVE_56
44.4
B_CELL_NAIVE_57
44.4
B_CELL_NAIVE_58
44.3
B_CELL_NAIVE_59
44.1
B_CELL_NAIVE_60
44.0
B_CELL_NAIVE_61
43.8
B_CELL_NAIVE_62
43.5
B_CELL_NAIVE_63
43.3
B_CELL_NAIVE_64
43.3
B_CELL_NAIVE_65
43.3
B_CELL_NAIVE_66
40.8
B_CELL_NAIVE_67
40.1
B_CELL_NAIVE_68
40.1
B_CELL_NAIVE_69
39.7
B_CELL_NAIVE_70
39.6
B_CELL_NAIVE_71
39.3
B_CELL_NAIVE_72
39.1
B_CELL_NAIVE_73
38.9
B_CELL_NAIVE_74
38.7
B_CELL_NAIVE_75
38.2
B_CELL_NAIVE_76
38.1
B_CELL_NAIVE_77
37.6
B_CELL_NAIVE_78
36.9
B_CELL_NAIVE_79
36.7
B_CELL_NAIVE_80
35.5
B_CELL_NAIVE_81
35.3
B_CELL_NAIVE_82
34.0
B_CELL_NAIVE_83
31.4
B_CELL_NAIVE_84
29.0
B_CELL_NAIVE_85
28.9
B_CELL_NAIVE_86
26.0
B_CELL_NAIVE_87
23.2
B_CELL_NAIVE_88
21.9
B_CELL_NAIVE_89
19.7
B_CELL_NAIVE_90
19.7
B_CELL_NAIVE_91
13.6
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