A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
318.8
nTPM
Monaco:
176.2
nTPM
Schmiedel:
105.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
318.8
HPA sample
nTPM
Classical monocyte nTPM: 237.0
Samples: 6
Max nTPM: 301.0
Min nTPM: 169.3
P10809_1003
246.6
P10809_1020
244.4
P10809_1039
301.0
P10809_1058
169.3
P10809_1080
227.9
P10809_1107
232.9
Intermediate monocyte nTPM: 262.5
Samples: 6
Max nTPM: 310.4
Min nTPM: 217.3
P10809_1004
217.3
P10809_1023
310.4
P10809_1042
302.9
P10809_1061
256.8
P10809_1081
227.0
P10809_1108
260.3
Non-classical monocyte nTPM: 318.8
Samples: 5
Max nTPM: 427.1
Min nTPM: 202.1
P10809_1005
303.5
P10809_1053
354.8
P10809_1072
427.1
P10809_1082
202.1
P10809_1109
306.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.2
Monaco sample
nTPM
Classical monocyte nTPM: 176.2
Samples: 4
Max nTPM: 216.0
Min nTPM: 146.9
RHH5313_R3680
149.8
RHH5221_R3593
146.9
RHH5250_R3622
216.0
RHH5279_R3651
191.9
Intermediate monocyte nTPM: 174.6
Samples: 4
Max nTPM: 218.8
Min nTPM: 132.8
RHH5314_R3681
204.6
RHH5222_R3594
132.8
RHH5251_R3623
142.0
RHH5280_R3652
218.8
Non-classical monocyte nTPM: 151.2
Samples: 4
Max nTPM: 201.2
Min nTPM: 100.4
RHH5315_R3682
167.2
RHH5223_R3595
100.4
RHH5252_R3624
135.9
RHH5281_R3653
201.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.0
Schmiedel sample id
TPM
Classical monocyte TPM: 86.7
Samples: 91
Max TPM: 102.3
Min TPM: 63.6
MONOCYTES_1
102.3
MONOCYTES_2
101.9
MONOCYTES_3
101.8
MONOCYTES_4
101.4
MONOCYTES_5
98.2
MONOCYTES_6
98.1
MONOCYTES_7
97.4
MONOCYTES_8
96.4
MONOCYTES_9
96.4
MONOCYTES_10
95.4
MONOCYTES_11
95.3
MONOCYTES_12
95.0
MONOCYTES_13
94.8
MONOCYTES_14
94.7
MONOCYTES_15
94.7
MONOCYTES_16
94.5
MONOCYTES_17
93.9
MONOCYTES_18
93.6
MONOCYTES_19
93.6
MONOCYTES_20
93.3
MONOCYTES_21
93.2
MONOCYTES_22
93.0
MONOCYTES_23
92.7
MONOCYTES_24
92.5
MONOCYTES_25
92.3
MONOCYTES_26
91.9
MONOCYTES_27
91.8
MONOCYTES_28
91.4
MONOCYTES_29
91.2
MONOCYTES_30
90.8
MONOCYTES_31
90.6
MONOCYTES_32
90.5
MONOCYTES_33
90.4
MONOCYTES_34
90.3
MONOCYTES_35
89.7
MONOCYTES_36
89.6
MONOCYTES_37
89.3
MONOCYTES_38
89.1
MONOCYTES_39
88.6
MONOCYTES_40
88.4
MONOCYTES_41
88.1
MONOCYTES_42
88.0
MONOCYTES_43
88.0
MONOCYTES_44
87.9
MONOCYTES_45
87.7
MONOCYTES_46
87.6
MONOCYTES_47
87.6
MONOCYTES_48
87.3
MONOCYTES_49
86.8
MONOCYTES_50
86.8
MONOCYTES_51
86.6
MONOCYTES_52
86.2
MONOCYTES_53
86.2
MONOCYTES_54
86.1
MONOCYTES_55
85.6
MONOCYTES_56
85.5
MONOCYTES_57
84.9
MONOCYTES_58
84.6
MONOCYTES_59
84.4
MONOCYTES_60
84.3
MONOCYTES_61
84.0
MONOCYTES_62
83.7
MONOCYTES_63
83.6
MONOCYTES_64
83.3
MONOCYTES_65
82.8
MONOCYTES_66
82.6
MONOCYTES_67
81.9
MONOCYTES_68
81.8
MONOCYTES_69
81.6
MONOCYTES_70
81.6
MONOCYTES_71
81.1
MONOCYTES_72
80.8
MONOCYTES_73
80.4
MONOCYTES_74
80.4
MONOCYTES_75
80.2
MONOCYTES_76
79.9
MONOCYTES_77
79.6
MONOCYTES_78
79.3
MONOCYTES_79
78.6
MONOCYTES_80
78.5
MONOCYTES_81
78.2
MONOCYTES_82
78.0
MONOCYTES_83
75.2
MONOCYTES_84
72.0
MONOCYTES_85
71.5
MONOCYTES_86
70.5
MONOCYTES_87
69.5
MONOCYTES_88
69.5
MONOCYTES_89
67.2
MONOCYTES_90
65.6
MONOCYTES_91
63.6
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Non-classical monocyte TPM: 105.0
Samples: 90
Max TPM: 138.9
Min TPM: 54.0
M2_1
138.9
M2_2
133.4
M2_3
131.2
M2_4
130.9
M2_5
129.7
M2_6
126.7
M2_7
124.3
M2_8
123.8
M2_9
122.5
M2_10
122.0
M2_11
118.6
M2_12
118.4
M2_13
118.2
M2_14
118.0
M2_15
117.9
M2_16
117.6
M2_17
117.2
M2_18
116.9
M2_19
116.9
M2_20
116.2
M2_21
114.9
M2_22
114.8
M2_23
114.6
M2_24
114.4
M2_25
114.2
M2_26
113.9
M2_27
113.6
M2_28
113.5
M2_29
113.3
M2_30
113.1
M2_31
113.1
M2_32
112.9
M2_33
112.8
M2_34
112.8
M2_35
112.5
M2_36
111.6
M2_37
111.4
M2_38
110.8
M2_39
110.8
M2_40
110.2
M2_41
109.9
M2_42
109.2
M2_43
109.1
M2_44
109.1
M2_45
108.7
M2_46
108.7
M2_47
108.4
M2_48
108.2
M2_49
106.8
M2_50
106.2
M2_51
106.0
M2_52
105.6
M2_53
105.5
M2_54
105.4
M2_55
105.3
M2_56
105.2
M2_57
102.5
M2_58
101.3
M2_59
100.9
M2_60
99.9
M2_61
99.8
M2_62
99.4
M2_63
99.2
M2_64
99.0
M2_65
98.8
M2_66
98.6
M2_67
98.0
M2_68
97.3
M2_69
96.3
M2_70
96.0
M2_71
95.6
M2_72
93.1
M2_73
92.9
M2_74
92.4
M2_75
90.0
M2_76
89.2
M2_77
89.0
M2_78
87.8
M2_79
85.3
M2_80
85.3
M2_81
84.5
M2_82
80.3
M2_83
79.9
M2_84
78.2
M2_85
77.7
M2_86
73.0
M2_87
72.6
M2_88
67.4
M2_89
58.3
M2_90
54.0
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