HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:43.3 nTPM
GTEx:12.3 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:33.5 nTPM
Allen mouse:16.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 43.3
Sample id Sample description nTPM
Hippocampus
nTPM: 40.1
2621 Female, age 67, right hemisphere 56.2
1911 Female, age 85, right hemisphere 46.3
2148 Female, age 91, left hemisphere 43.5
2529 Female, age 94, left hemisphere 39.7
1898 Male, age 80, left hemisphere 29.6
1855 Male, age 76, left hemisphere 25.5
Dentate gyrus
nTPM: 36.9
1927 Female, age 91, both hemispheres 51.5
2531 Female, age 67, both hemispheres 49.3
2530 Female, age 94, left hemisphere 34.3
2528 Male, age 74, both hemispheres 32.2
2246 Female, age 85, both hemispheres 28.2
2010 Male, age 76, both hemispheres 26.1
Entorhinal gyrus
nTPM: 21.7
2686 Male, age 75, right hemisphere 24.9
2613 Female, age 94, left hemisphere 24.5
2764 Male, age 80, right hemisphere 22.8
1787 Male, age 76, left hemisphere 22.1
2117 Female, age 91, right hemisphere 19.7
1938 Female, age 85, left hemisphere 15.9
Hippocampus, CA1
nTPM: 36.1
2749 Male, age 80, left hemisphere 65.0
2527 Male, age 74, both hemispheres 41.2
1873 Female, age 85, both hemispheres 30.0
2045 Male, age 76, both hemispheres 26.4
2082 Female, age 91, right hemisphere 17.9
Hippocampus, CA2
nTPM: 27.7
2249 Male, age 74, both hemispheres 38.5
1963 Male, age 80, left hemisphere 35.4
1892 Male, age 76, both hemispheres 26.8
2437 Female, age 94, left hemisphere 25.8
2113 Female, age 91, right hemisphere 21.0
1940 Female, age 85, left hemisphere 18.7
Hippocampus, CA3
nTPM: 43.3
2137 Male, age 80, left hemisphere 63.0
2861 Female, age 67, both hemispheres 57.4
2620 Female, age 94, left hemisphere 57.3
1867 Male, age 76, both hemispheres 36.4
2436 Male, age 74, both hemispheres 23.0
1891 Female, age 85, both hemispheres 22.5
Parahippocampal cortex
nTPM: 24.7
2245 Female, age 91, both hemispheres 42.9
2250 Female, age 67, right hemisphere 33.2
2622 Female, age 67, right hemisphere 31.0
2693 Female, age 94, both hemispheres 23.6
1933 Female, age 85, both hemispheres 21.7
2532 Female, age 72, left hemisphere 21.4
1990 Female, age 91, right hemisphere 21.2
2018 Male, age 76, both hemispheres 20.7
2692 Male, age 74, both hemispheres 17.6
1850 Male, age 80, both hemispheres 13.7
Perirhinal gyrus
nTPM: 21.2
2521 Female, age 94, right hemisphere 33.3
1847 Female, age 91, left hemisphere 20.8
1794 Male, age 80, right hemisphere 20.4
1841 Female, age 85, right hemisphere 18.9
2848 Male, age 76, right hemisphere 12.6
Subiculum
nTPM: 26.8
1901 Male, age 80, both hemispheres 38.8
2729 Female, age 91, right hemisphere 27.8
2042 Male, age 76, both hemispheres 27.7
2619 Male, age 74, both hemispheres 27.6
1977 Female, age 85, both hemispheres 19.9
2438 Female, age 94, left hemisphere 19.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.3
Samples: 255

Max nTPM: 40.9
Min nTPM: 1.0
Std nTPM: 7.1
Median nTPM: 11.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 40.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 39.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 36.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 36.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 35.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 34.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 30.7
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 30.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 30.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 30.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 26.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.5
FF:10169-103B7 60 years, female 30.1
FF:10153-102I9 76 years, female 22.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.9
Pig sample Sample description nTPM
Subiculum
nTPM: 13.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.2
Sample A Female 15.9
Sample B Female 12.3
Sample C Male 12.2
Sample D Male 13.6
Dorsal hippocampus
nTPM: 13.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 12.0
Sample A Female 14.4
Sample B Female 13.9
Sample C Male 12.0
Sample D Male 13.7
Entorhinal cortex
nTPM: 17.8
Samples: 4

Max nTPM: 20.6
Min nTPM: 16.6
Sample A Female 17.4
Sample B Female 16.7
Sample C Male 16.6
Sample D Male 20.6
Ventral hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.0
Sample A Female 11.0
Sample B Female 10.0
Sample C Male 15.2
Sample D Male 15.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 33.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 28.4
Sample A Male 28.4
Sample B Male 35.0
Sample C Female 31.7
Sample D Female 38.8
Hippocampal formation
nTPM: 31.2
Samples: 4

Max nTPM: 36.9
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 36.9
Sample C Female 33.3
Sample D Female 29.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.1
69671576 Antisense, RP_050428_01_G11, Mouse strain C57BL/6J (56 days, male) 16.3
74882515 Antisense, RP_060315_04_E10, Mouse strain C57BL/6J (56 days, male) 15.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo