MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.3 nTPM
HPA Brain:85.7 nTPM
GTEx:73.3 nTPM
FANTOM5:156.4 Scaled Tags Per Million
Pig:52.9 nTPM
Mouse:46.3 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.2
2666 Male, age 74, left hemisphere 91.5
1870 Female, age 42, unknown 85.8
1827 Male, age 72, unknown 80.1
1833 Male, age 53, unknown 78.1
2828 Female, age 72, unknown 78.0
1830 Male, age 51, unknown 76.6
2411 Female, age 72, unknown 75.3
2219 Male, age 76, both hemispheres 73.6
2019 Male, age 18, unknown 73.4
2586 Male, age 75, left hemisphere 69.7
Dorsal raphe nucleus
nTPM: 71.2
2750 Male, age 76, both hemispheres 78.8
2016 Female, age 72, unknown 78.6
1828 Male, age 53, unknown 74.3
2047 Male, age 72, unknown 62.6
2298 Female, age 72, unknown 61.5
Inferior colliculus
nTPM: 73.7
2849 Male, age 72, unknown 82.4
1890 Male, age 53, unknown 75.6
1848 Female, age 42, unknown 69.4
2097 Female, age 72, unknown 67.2
Median raphe nucleus
nTPM: 80.1
2220 Male, age 76, midline 80.1
Periaquaductal grey, anterior
nTPM: 68.2
2502 Female, age 75, unknown 70.7
1947 Male, age 18, unknown 69.9
1795 Male, age 51, unknown 64.1
Periaquaductal grey, dorsal
nTPM: 82.2
2850 Male, age 76, both hemispheres 107.3
1831 Male, age 72, unknown 77.8
1840 Male, age 53, unknown 74.1
2464 Female, age 72, unknown 69.6
Periaquaductal grey, lateral
nTPM: 75.2
2140 Male, age 76, both hemispheres 85.0
2053 Male, age 18, unknown 75.4
2272 Male, age 74, both hemispheres 65.4
Pretectal area
nTPM: 73.4
1815 Male, age 53, unknown 81.5
2825 Male, age 18, unknown 81.5
1817 Female, age 42, unknown 78.0
2007 Male, age 72, unknown 76.2
1816 Male, age 51, unknown 74.3
1944 Female, age 72, unknown 72.0
2407 Male, age 75, both hemispheres 70.9
2224 Female, age 72, unknown 70.8
2316 Male, age 76, right hemisphere 70.2
2667 Female, age 75, unknown 68.7
2273 Male, age 74, both hemispheres 63.9
Red nucleus
nTPM: 85.7
2503 Female, age 72, unknown 96.7
2588 Male, age 74, left hemisphere 95.2
2823 Male, age 76, right hemisphere 92.9
1865 Male, age 51, unknown 92.6
2725 Female, age 75, unknown 88.7
1904 Male, age 53, unknown 87.8
1954 Female, age 42, unknown 86.9
1821 Female, age 72, unknown 85.9
2769 Male, age 72, unknown 82.5
2227 Male, age 72, unknown 77.2
2785 Male, age 18, unknown 76.9
2584 Male, age 75, left hemisphere 64.6
Substantia nigra
nTPM: 76.2
2665 Male, age 74, both hemispheres 87.4
2699 Male, age 18, unknown 84.5
1916 Female, age 42, unknown 76.8
2409 Female, age 72, unknown 76.7
1851 Male, age 51, unknown 76.3
2241 Male, age 72, unknown 76.2
1941 Male, age 53, unknown 75.8
2590 Female, age 75, unknown 71.0
2583 Male, age 75, right hemisphere 69.6
1889 Female, age 72, unknown 67.4
Superior colliculus
nTPM: 75.0
1913 Female, age 42, unknown 85.4
1995 Male, age 72, unknown 83.3
2587 Male, age 74, left hemisphere 82.3
2668 Female, age 75, unknown 79.0
2087 Female, age 72, unknown 73.6
1839 Male, age 51, unknown 72.2
1796 Male, age 53, unknown 72.1
1895 Male, age 76, right hemisphere 70.9
2261 Male, age 18, unknown 68.8
2664 Male, age 75, both hemispheres 62.8
Ventral tegmental area
nTPM: 71.5
2218 Male, age 76, both hemispheres 74.2
1915 Female, age 42, unknown 72.6
2223 Female, age 72, unknown 72.6
1942 Male, age 51, unknown 72.3
2410 Female, age 72, unknown 72.2
2021 Male, age 53, unknown 65.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.3
Samples: 183

Max nTPM: 133.5
Min nTPM: 28.7
Std nTPM: 16.4
Median nTPM: 70.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 133.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 118.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 116.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 110.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 109.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 107.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 106.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 105.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 105.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 105.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 156.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.4
FF:10158-103A5 76 years, female 156.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.9
Samples: 4

Max nTPM: 52.3
Min nTPM: 48.0
Sample A Female 50.2
Sample B Female 48.9
Sample C Male 48.0
Sample D Male 52.3
Midbrain
nTPM: 52.9
Samples: 4

Max nTPM: 71.4
Min nTPM: 41.6
Sample A Female 71.4
Sample B Female 54.6
Sample C Male 41.6
Sample D Male 43.9
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 56.0
Min nTPM: 47.6
Sample B Female 53.1
Sample C Male 56.0
Sample D Male 47.6
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 54.2
Min nTPM: 47.5
Sample A Female 51.4
Sample B Female 54.2
Sample C Male 47.5
Sample D Male 49.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 44.1
Sample A Male 45.1
Sample B Male 44.1
Sample C Female 48.5
Sample D Female 47.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
69735072 Antisense, RP_050503_02_A06, Mouse strain C57BL/6J (56 days, male) 6.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo