On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
90.4
nTPM
HPA Brain:
121.1
nTPM
GTEx:
90.4
nTPM
FANTOM5:
42.5
Scaled Tags Per Million
Macaque:
45.4
nTPM
Mouse:
82.8
nTPM
Rat:
79.2
nTPM
Pig:
53.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 116.9
2586
Male, age 75, left hemisphere
188.2
2019
Male, age 18, unknown
151.0
2828
Female, age 72, unknown
112.5
2666
Male, age 74, left hemisphere
108.5
2411
Female, age 72, unknown
107.7
1830
Male, age 51, unknown
103.8
1827
Male, age 72, unknown
103.5
1833
Male, age 53, unknown
101.6
1870
Female, age 42, unknown
100.1
2219
Male, age 76, both hemispheres
91.7
Dorsal raphe nucleus nTPM: 102.9
1828
Male, age 53, unknown
118.4
2047
Male, age 72, unknown
109.5
2750
Male, age 76, both hemispheres
103.5
2016
Female, age 72, unknown
98.4
2298
Female, age 72, unknown
84.8
Inferior colliculus nTPM: 100.9
1848
Female, age 42, unknown
112.2
1890
Male, age 53, unknown
101.6
2849
Male, age 72, unknown
100.2
2097
Female, age 72, unknown
89.6
Median raphe nucleus nTPM: 98.1
2220
Male, age 76, midline
98.1
Periaquaductal grey, anterior nTPM: 105.2
2502
Female, age 75, unknown
117.3
1795
Male, age 51, unknown
102.5
1947
Male, age 18, unknown
95.7
Periaquaductal grey, dorsal nTPM: 81.1
2464
Female, age 72, unknown
91.5
1840
Male, age 53, unknown
89.9
2850
Male, age 76, both hemispheres
73.8
1831
Male, age 72, unknown
69.2
Periaquaductal grey, lateral nTPM: 76.9
2140
Male, age 76, both hemispheres
79.5
2053
Male, age 18, unknown
76.4
2272
Male, age 74, both hemispheres
74.8
Pretectal area nTPM: 100.7
2007
Male, age 72, unknown
144.2
1817
Female, age 42, unknown
131.4
1816
Male, age 51, unknown
114.9
1944
Female, age 72, unknown
106.5
2407
Male, age 75, both hemispheres
105.1
1815
Male, age 53, unknown
101.3
2316
Male, age 76, right hemisphere
87.1
2667
Female, age 75, unknown
85.8
2825
Male, age 18, unknown
81.1
2224
Female, age 72, unknown
78.4
2273
Male, age 74, both hemispheres
72.4
Red nucleus nTPM: 120.9
2785
Male, age 18, unknown
148.1
2584
Male, age 75, left hemisphere
135.8
2588
Male, age 74, left hemisphere
135.0
2227
Male, age 72, unknown
130.5
2769
Male, age 72, unknown
127.8
2503
Female, age 72, unknown
119.9
1821
Female, age 72, unknown
114.9
1954
Female, age 42, unknown
112.6
1904
Male, age 53, unknown
112.0
1865
Male, age 51, unknown
110.9
2823
Male, age 76, right hemisphere
105.3
2725
Female, age 75, unknown
97.9
Substantia nigra nTPM: 121.1
2665
Male, age 74, both hemispheres
151.3
1916
Female, age 42, unknown
143.3
1851
Male, age 51, unknown
133.3
2583
Male, age 75, right hemisphere
125.4
2590
Female, age 75, unknown
125.0
1941
Male, age 53, unknown
121.3
1889
Female, age 72, unknown
114.4
2699
Male, age 18, unknown
101.6
2241
Male, age 72, unknown
98.7
2409
Female, age 72, unknown
97.1
Superior colliculus nTPM: 103.7
2664
Male, age 75, both hemispheres
141.0
2668
Female, age 75, unknown
123.7
2087
Female, age 72, unknown
105.8
1796
Male, age 53, unknown
102.8
1839
Male, age 51, unknown
101.6
2261
Male, age 18, unknown
99.2
2587
Male, age 74, left hemisphere
96.1
1895
Male, age 76, right hemisphere
95.7
1995
Male, age 72, unknown
88.5
1913
Female, age 42, unknown
83.0
Ventral tegmental area nTPM: 107.9
1915
Female, age 42, unknown
117.9
2410
Female, age 72, unknown
116.7
2223
Female, age 72, unknown
110.7
2218
Male, age 76, both hemispheres
104.8
1942
Male, age 51, unknown
101.9
2021
Male, age 53, unknown
95.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 90.4
Samples: 183
Max nTPM: 159.0
Min nTPM: 38.5
Std nTPM: 20.6
Median nTPM: 89.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
159.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
145.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
143.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
143.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
137.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
134.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
132.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
128.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
128.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
126.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
125.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
122.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
119.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
119.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
118.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
118.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
117.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
115.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
115.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
115.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
114.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
114.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
113.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
113.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
113.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
112.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
112.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
111.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
110.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
109.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
108.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
107.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
106.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
106.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
106.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
106.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
105.7
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
105.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
105.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
104.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
104.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
104.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
104.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
103.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
103.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
103.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
102.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
102.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
102.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
101.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
101.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
100.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
100.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
99.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
99.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
99.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
99.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
99.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
98.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
98.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
98.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
98.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
98.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
97.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
97.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
97.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
97.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
97.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
96.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
96.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
96.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
96.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
96.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
96.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
95.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
95.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
95.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
95.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
94.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
94.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
93.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
93.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
93.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
93.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
93.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
92.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
92.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
91.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
91.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
91.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
90.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
89.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
89.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
89.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
88.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
88.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
88.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
88.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
86.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
86.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
85.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
85.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
85.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
85.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
85.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
84.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
84.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
83.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
83.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
83.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
82.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
82.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
81.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
80.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
80.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
80.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
80.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
79.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
79.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
79.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
79.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
78.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
78.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
78.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
77.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
77.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
77.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
77.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
77.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
77.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
77.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
77.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
76.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
76.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
76.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
76.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
75.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
75.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
75.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
74.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
74.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
74.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
74.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
74.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
73.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
73.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
73.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
73.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
73.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
73.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
72.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
72.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
72.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
72.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
72.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
72.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
70.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
70.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
69.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
69.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
68.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
68.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
68.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
68.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
67.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
66.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
65.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
65.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
64.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
63.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
63.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
62.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
61.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
59.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
57.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
56.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
54.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
52.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
49.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
48.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
46.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
45.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38.5
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 34.7
Samples: 1
Max nTPM: 34.7
Min nTPM: 34.7
Sample A
34.7
Midbrain nTPM: 29.7
Samples: 1
Max nTPM: 29.7
Min nTPM: 29.7
Sample A
29.7
Superior colliculi nTPM: 45.4
Samples: 1
Max nTPM: 45.4
Min nTPM: 45.4
Sample A
45.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 43.5
Samples: 3
Max nTPM: 56.9
Min nTPM: 32.1
Sample A
Female
56.9
Sample B
Female
32.1
Sample C
Male
41.6
Midbrain nTPM: 44.0
Samples: 3
Max nTPM: 58.2
Min nTPM: 36.1
Sample B
Female
37.8
Sample C
Male
58.2
Sample D
Male
36.1
Periaqueductal gray nTPM: 31.5
Samples: 3
Max nTPM: 35.9
Min nTPM: 24.6
Sample B
Female
35.9
Sample C
Male
34.0
Sample D
Male
24.6
Superior colliculi nTPM: 53.5
Samples: 4
Max nTPM: 62.2
Min nTPM: 44.8
Sample A
Female
59.5
Sample B
Female
44.8
Sample C
Male
62.2
Sample D
Male
47.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 82.8
Samples: 4
Max nTPM: 89.5
Min nTPM: 78.6
Sample A
84.0
Sample B
89.5
Sample C
78.6
Sample D
79.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.2
Rat sample
Sample description
nTPM
Midbrain nTPM: 79.3
Samples: 4
Max nTPM: 83.7
Min nTPM: 75.8
Sample A
77.7
Sample A
83.7
Sample A
79.8
Sample A
75.8
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
