A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.9
nTPM
Monaco:
20.1
nTPM
Schmiedel:
34.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.9
HPA sample
nTPM
NK-cell nTPM: 7.9
Samples: 6
Max nTPM: 15.8
Min nTPM: 1.8
P10809_1013
1.8
P10809_1033
5.7
P10809_1052
15.8
P10809_1071
9.6
P10809_1093
5.2
P10809_1103
9.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Monaco sample
nTPM
NK-cell nTPM: 20.1
Samples: 4
Max nTPM: 24.7
Min nTPM: 13.0
RHH5316_R3683
23.1
RHH5224_R3596
13.0
RHH5253_R3625
24.7
RHH5282_R3654
19.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.7
Schmiedel sample id
TPM
NK-cell TPM: 34.7
Samples: 90
Max TPM: 60.5
Min TPM: 14.4
NK_1
60.5
NK_2
58.3
NK_3
56.4
NK_4
55.3
NK_5
54.9
NK_6
54.4
NK_7
52.3
NK_8
51.0
NK_9
50.2
NK_10
50.0
NK_11
49.0
NK_12
48.9
NK_13
48.0
NK_14
48.0
NK_15
47.8
NK_16
47.2
NK_17
46.1
NK_18
45.9
NK_19
45.5
NK_20
44.5
NK_21
43.7
NK_22
43.5
NK_23
43.3
NK_24
42.4
NK_25
42.4
NK_26
42.4
NK_27
41.8
NK_28
41.2
NK_29
41.0
NK_30
40.1
NK_31
38.7
NK_32
38.4
NK_33
38.4
NK_34
38.1
NK_35
37.1
NK_36
36.9
NK_37
36.3
NK_38
36.3
NK_39
36.3
NK_40
36.2
NK_41
35.8
NK_42
35.7
NK_43
35.5
NK_44
35.1
NK_45
33.9
NK_46
33.9
NK_47
33.4
NK_48
33.3
NK_49
33.1
NK_50
33.1
NK_51
32.7
NK_52
32.7
NK_53
32.5
NK_54
31.3
NK_55
31.0
NK_56
30.4
NK_57
30.2
NK_58
30.0
NK_59
29.8
NK_60
29.6
NK_61
29.0
NK_62
28.4
NK_63
27.3
NK_64
26.3
NK_65
26.2
NK_66
25.9
NK_67
25.9
NK_68
25.7
NK_69
25.7
NK_70
24.7
NK_71
24.4
NK_72
24.2
NK_73
24.1
NK_74
23.7
NK_75
23.6
NK_76
23.1
NK_77
22.8
NK_78
22.1
NK_79
21.2
NK_80
20.4
NK_81
19.7
NK_82
19.3
NK_83
18.1
NK_84
17.8
NK_85
17.4
NK_86
17.3
NK_87
16.9
NK_88
15.2
NK_89
14.9
NK_90
14.4
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