A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.6
nTPM
Monaco:
45.7
nTPM
Schmiedel:
60.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
HPA sample
nTPM
Classical monocyte nTPM: 18.5
Samples: 6
Max nTPM: 30.0
Min nTPM: 8.3
P10809_1003
8.3
P10809_1020
18.1
P10809_1039
30.0
P10809_1058
20.5
P10809_1080
24.1
P10809_1107
10.1
Intermediate monocyte nTPM: 28.6
Samples: 6
Max nTPM: 45.4
Min nTPM: 11.2
P10809_1004
18.4
P10809_1023
37.0
P10809_1042
35.9
P10809_1061
23.8
P10809_1081
45.4
P10809_1108
11.2
Non-classical monocyte nTPM: 25.8
Samples: 5
Max nTPM: 46.4
Min nTPM: 14.2
P10809_1005
18.5
P10809_1053
35.8
P10809_1072
14.2
P10809_1082
46.4
P10809_1109
14.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
Classical monocyte nTPM: 45.7
Samples: 4
Max nTPM: 53.4
Min nTPM: 41.1
RHH5313_R3680
42.3
RHH5221_R3593
41.1
RHH5250_R3622
53.4
RHH5279_R3651
45.8
Intermediate monocyte nTPM: 37.5
Samples: 4
Max nTPM: 48.7
Min nTPM: 22.0
RHH5314_R3681
38.7
RHH5222_R3594
22.0
RHH5251_R3623
40.6
RHH5280_R3652
48.7
Non-classical monocyte nTPM: 32.1
Samples: 4
Max nTPM: 44.7
Min nTPM: 15.1
RHH5315_R3682
36.3
RHH5223_R3595
15.1
RHH5252_R3624
44.7
RHH5281_R3653
32.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Schmiedel sample id
TPM
Classical monocyte TPM: 52.2
Samples: 91
Max TPM: 82.1
Min TPM: 27.9
MONOCYTES_1
82.1
MONOCYTES_2
81.7
MONOCYTES_3
77.4
MONOCYTES_4
73.8
MONOCYTES_5
72.0
MONOCYTES_6
71.2
MONOCYTES_7
70.0
MONOCYTES_8
69.4
MONOCYTES_9
68.9
MONOCYTES_10
68.3
MONOCYTES_11
67.0
MONOCYTES_12
65.7
MONOCYTES_13
65.7
MONOCYTES_14
65.1
MONOCYTES_15
64.7
MONOCYTES_16
63.9
MONOCYTES_17
63.9
MONOCYTES_18
62.4
MONOCYTES_19
61.9
MONOCYTES_20
61.7
MONOCYTES_21
61.6
MONOCYTES_22
61.0
MONOCYTES_23
61.0
MONOCYTES_24
60.7
MONOCYTES_25
60.3
MONOCYTES_26
60.1
MONOCYTES_27
60.1
MONOCYTES_28
59.9
MONOCYTES_29
59.6
MONOCYTES_30
59.2
MONOCYTES_31
58.8
MONOCYTES_32
58.8
MONOCYTES_33
58.2
MONOCYTES_34
57.8
MONOCYTES_35
57.2
MONOCYTES_36
56.5
MONOCYTES_37
56.1
MONOCYTES_38
55.5
MONOCYTES_39
55.1
MONOCYTES_40
55.0
MONOCYTES_41
54.9
MONOCYTES_42
54.3
MONOCYTES_43
53.9
MONOCYTES_44
52.8
MONOCYTES_45
52.2
MONOCYTES_46
52.2
MONOCYTES_47
52.1
MONOCYTES_48
51.5
MONOCYTES_49
50.9
MONOCYTES_50
50.7
MONOCYTES_51
50.7
MONOCYTES_52
50.6
MONOCYTES_53
48.3
MONOCYTES_54
48.1
MONOCYTES_55
48.0
MONOCYTES_56
47.8
MONOCYTES_57
47.0
MONOCYTES_58
46.8
MONOCYTES_59
45.8
MONOCYTES_60
45.7
MONOCYTES_61
45.6
MONOCYTES_62
45.3
MONOCYTES_63
45.0
MONOCYTES_64
44.4
MONOCYTES_65
44.3
MONOCYTES_66
44.1
MONOCYTES_67
44.0
MONOCYTES_68
43.7
MONOCYTES_69
43.1
MONOCYTES_70
42.4
MONOCYTES_71
41.5
MONOCYTES_72
41.2
MONOCYTES_73
40.5
MONOCYTES_74
40.5
MONOCYTES_75
39.2
MONOCYTES_76
39.1
MONOCYTES_77
38.5
MONOCYTES_78
38.2
MONOCYTES_79
37.3
MONOCYTES_80
37.3
MONOCYTES_81
37.1
MONOCYTES_82
36.0
MONOCYTES_83
34.4
MONOCYTES_84
34.1
MONOCYTES_85
34.1
MONOCYTES_86
32.9
MONOCYTES_87
32.7
MONOCYTES_88
30.7
MONOCYTES_89
29.9
MONOCYTES_90
28.8
MONOCYTES_91
27.9
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Non-classical monocyte TPM: 60.5
Samples: 90
Max TPM: 112.6
Min TPM: 21.0
M2_1
112.6
M2_2
98.8
M2_3
97.4
M2_4
94.1
M2_5
93.9
M2_6
93.8
M2_7
92.7
M2_8
88.8
M2_9
88.3
M2_10
87.9
M2_11
87.5
M2_12
86.0
M2_13
84.4
M2_14
83.2
M2_15
81.7
M2_16
79.4
M2_17
77.2
M2_18
74.7
M2_19
74.3
M2_20
73.9
M2_21
73.4
M2_22
73.2
M2_23
72.1
M2_24
70.7
M2_25
70.4
M2_26
70.2
M2_27
70.1
M2_28
69.7
M2_29
69.7
M2_30
69.2
M2_31
68.8
M2_32
67.5
M2_33
67.3
M2_34
67.2
M2_35
67.1
M2_36
66.9
M2_37
66.7
M2_38
66.5
M2_39
65.4
M2_40
64.5
M2_41
64.3
M2_42
64.0
M2_43
62.6
M2_44
62.2
M2_45
61.8
M2_46
60.5
M2_47
60.4
M2_48
59.6
M2_49
58.5
M2_50
57.9
M2_51
57.1
M2_52
56.6
M2_53
56.0
M2_54
55.7
M2_55
55.6
M2_56
54.7
M2_57
53.2
M2_58
53.0
M2_59
52.6
M2_60
52.6
M2_61
51.9
M2_62
51.4
M2_63
50.8
M2_64
50.6
M2_65
48.1
M2_66
47.6
M2_67
47.0
M2_68
46.1
M2_69
45.8
M2_70
44.0
M2_71
43.4
M2_72
43.4
M2_73
43.2
M2_74
43.0
M2_75
42.5
M2_76
42.3
M2_77
36.7
M2_78
35.6
M2_79
34.4
M2_80
32.8
M2_81
32.5
M2_82
32.2
M2_83
30.9
M2_84
30.7
M2_85
29.9
M2_86
26.9
M2_87
24.1
M2_88
23.6
M2_89
22.4
M2_90
21.0
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