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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:165.0 nTPM
HPA Brain:146.0 nTPM
GTEx:165.0 nTPM
FANTOM5:295.4 Scaled Tags Per Million
Pig:101.1 nTPM
Mouse:555.3 nTPM
Allen mouse:24.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.0
Sample id Sample description nTPM
Amygdala
nTPM: 146.0
2814 Male, age 76, right hemisphere 189.0
2514 Male, age 75, right hemisphere 164.0
2695 Female, age 67, right hemisphere 138.9
1987 Female, age 91, left hemisphere 127.3
2517 Female, age 94, left hemisphere 110.7
Basal amygdala
nTPM: 109.7
2609 Male, age 75, right hemisphere 137.7
1955 Male, age 76, both hemispheres 119.4
2110 Male, age 80, left hemisphere 114.5
2243 Female, age 91, right hemisphere 109.2
2685 Female, age 94, left hemisphere 109.1
2827 Female, age 67, right hemisphere 68.2
Central amygdala
nTPM: 124.5
1905 Male, age 76, both hemispheres 155.9
2826 Female, age 94, left hemisphere 127.2
2515 Male, age 75, right hemisphere 115.8
2239 Male, age 80, left hemisphere 112.1
2701 Female, age 91, right hemisphere 111.8
Corticomedial amygdala
nTPM: 109.7
2829 Male, age 80, left hemisphere 122.3
2242 Female, age 91, right hemisphere 120.7
2429 Female, age 94, left hemisphere 113.1
2428 Male, age 75, right hemisphere 109.0
2240 Male, age 76, both hemispheres 103.5
2535 Female, age 67, right hemisphere 89.5
Lateral amygdala
nTPM: 113.9
1883 Male, age 76, both hemispheres 144.8
2516 Male, age 75, right hemisphere 136.9
2534 Female, age 94, left hemisphere 120.5
2256 Male, age 80, left hemisphere 101.8
2255 Female, age 91, right hemisphere 100.6
2830 Female, age 67, right hemisphere 78.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 165.0
Samples: 181

Max nTPM: 375.5
Min nTPM: 87.5
Std nTPM: 48.0
Median nTPM: 154.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 375.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 345.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 314.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 308.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 264.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 264.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 252.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 248.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 248.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 248.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 247.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 245.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 243.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 242.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 242.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 240.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 239.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 238.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 234.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 232.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 230.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 228.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 228.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 223.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 219.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 216.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 210.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 209.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 209.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 208.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 208.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 207.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 206.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 205.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 204.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 201.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 197.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 193.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 193.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 193.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 192.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 188.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 188.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 188.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 185.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 185.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 184.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 180.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 179.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 177.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 176.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 175.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 173.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 172.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 172.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 171.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 170.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 166.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 166.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 165.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 165.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 165.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 165.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 164.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 163.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 163.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 162.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 162.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 162.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 162.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 162.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 162.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 161.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 160.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 160.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 160.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 159.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 158.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 155.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 154.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 151.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 150.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 149.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 149.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 147.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 146.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 146.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 146.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 146.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 145.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 145.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 144.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 144.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 143.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 142.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 142.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 140.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 137.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 137.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 137.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 137.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 137.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 137.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 137.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 136.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 136.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 136.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 135.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 134.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 134.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 133.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 132.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 132.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 131.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 130.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 129.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 128.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 128.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 128.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 128.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 126.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 126.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 124.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 122.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 121.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 121.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 119.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 118.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 118.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 115.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 114.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 113.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 111.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 109.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 109.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 107.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 107.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 96.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 91.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 87.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

295.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 295.4
FF:10151-102I7 76 years, female 295.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Pig sample Sample description nTPM
Amygdala
nTPM: 101.1
Samples: 4

Max nTPM: 117.2
Min nTPM: 92.4
Sample A Female 117.2
Sample B Female 99.6
Sample C Male 95.1
Sample D Male 92.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

555.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 555.3
Samples: 4

Max nTPM: 588.6
Min nTPM: 521.8
Sample A Male 588.6
Sample B Male 521.8
Sample C Female 564.1
Sample D Female 546.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.6
75694901 Antisense, RP_060518_04_A09, Mouse strain C57BL/6J (56 days, male) 24.9
544902 Antisense, RP_040420_01_H11, Mouse strain C57BL/6J (56 days, male) 24.3

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