HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:63.7 nTPM
HPA Brain:43.2 nTPM
GTEx:63.7 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:90.1 nTPM
Allen mouse:25.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048985
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Hippocampus
nTPM: 40.5
1898 Male, age 80, left hemisphere 47.1
2529 Female, age 94, left hemisphere 44.4
2148 Female, age 91, left hemisphere 41.3
1911 Female, age 85, right hemisphere 38.2
1855 Male, age 76, left hemisphere 37.0
2621 Female, age 67, right hemisphere 35.2
Dentate gyrus
nTPM: 41.0
2010 Male, age 76, both hemispheres 47.2
2530 Female, age 94, left hemisphere 47.2
1927 Female, age 91, both hemispheres 43.8
2528 Male, age 74, both hemispheres 42.0
2531 Female, age 67, both hemispheres 33.4
2246 Female, age 85, both hemispheres 32.3
Entorhinal gyrus
nTPM: 38.7
2764 Male, age 80, right hemisphere 45.6
1787 Male, age 76, left hemisphere 39.3
1938 Female, age 85, left hemisphere 39.3
2117 Female, age 91, right hemisphere 38.1
2686 Male, age 75, right hemisphere 35.8
2613 Female, age 94, left hemisphere 34.4
Hippocampus, CA1
nTPM: 41.6
2749 Male, age 80, left hemisphere 56.1
1873 Female, age 85, both hemispheres 45.8
2527 Male, age 74, both hemispheres 36.7
2045 Male, age 76, both hemispheres 35.8
2082 Female, age 91, right hemisphere 33.7
Hippocampus, CA2
nTPM: 43.2
1963 Male, age 80, left hemisphere 52.6
1892 Male, age 76, both hemispheres 51.5
2437 Female, age 94, left hemisphere 40.5
1940 Female, age 85, left hemisphere 39.7
2249 Male, age 74, both hemispheres 39.4
2113 Female, age 91, right hemisphere 35.7
Hippocampus, CA3
nTPM: 40.0
1867 Male, age 76, both hemispheres 47.1
2137 Male, age 80, left hemisphere 42.6
2861 Female, age 67, both hemispheres 39.7
2436 Male, age 74, both hemispheres 37.9
1891 Female, age 85, both hemispheres 37.4
2620 Female, age 94, left hemisphere 35.1
Parahippocampal cortex
nTPM: 35.9
1990 Female, age 91, right hemisphere 39.3
1850 Male, age 80, both hemispheres 38.8
2692 Male, age 74, both hemispheres 38.6
1933 Female, age 85, both hemispheres 38.5
2250 Female, age 67, right hemisphere 38.4
2245 Female, age 91, both hemispheres 36.8
2018 Male, age 76, both hemispheres 35.8
2622 Female, age 67, right hemisphere 32.6
2532 Female, age 72, left hemisphere 31.1
2693 Female, age 94, both hemispheres 29.1
Perirhinal gyrus
nTPM: 36.9
1794 Male, age 80, right hemisphere 40.3
1847 Female, age 91, left hemisphere 39.4
1841 Female, age 85, right hemisphere 36.5
2521 Female, age 94, right hemisphere 34.3
2848 Male, age 76, right hemisphere 33.8
Subiculum
nTPM: 38.8
1901 Male, age 80, both hemispheres 45.7
2042 Male, age 76, both hemispheres 44.0
1977 Female, age 85, both hemispheres 39.9
2619 Male, age 74, both hemispheres 38.2
2729 Female, age 91, right hemisphere 36.4
2438 Female, age 94, left hemisphere 28.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 63.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.7
Samples: 255

Max nTPM: 125.9
Min nTPM: 20.4
Std nTPM: 15.3
Median nTPM: 61.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 125.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 119.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 110.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 107.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 101.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 97.5
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 96.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 95.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 95.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 94.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 93.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.8
FF:10169-103B7 60 years, female 54.0
FF:10153-102I9 76 years, female 51.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 10.6
Pig sample Sample description nTPM
Subiculum
nTPM: 9.5
Samples: 4

Max nTPM: 9.9
Min nTPM: 9.3
Sample A Female 9.9
Sample B Female 9.5
Sample C Male 9.3
Sample D Male 9.4
Dorsal hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 10.3
Sample A Female 11.1
Sample B Female 10.8
Sample C Male 10.3
Sample D Male 10.3
Entorhinal cortex
nTPM: 10.1
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 10.5
Sample C Male 10.2
Sample D Male 10.1
Ventral hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 10.8
Min nTPM: 10.0
Sample A Female 10.5
Sample B Female 10.0
Sample C Male 10.4
Sample D Male 10.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 90.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.2
Samples: 4

Max nTPM: 95.1
Min nTPM: 74.5
Sample A Male 87.3
Sample B Male 83.8
Sample C Female 95.1
Sample D Female 74.5
Hippocampal formation
nTPM: 90.1
Samples: 4

Max nTPM: 97.3
Min nTPM: 80.9
Sample A Male 90.3
Sample B Male 80.9
Sample C Female 91.8
Sample D Female 97.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 25.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.8
512769 Antisense, RP_040809_02_D07, Mouse strain C57BL/6J (56 days, male) 25.8

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