A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
100.0
nTPM
Monaco:
20.1
nTPM
Schmiedel:
12.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.0
HPA sample
nTPM
NK-cell nTPM: 100.0
Samples: 6
Max nTPM: 140.6
Min nTPM: 36.6
P10809_1013
47.7
P10809_1033
131.6
P10809_1052
111.3
P10809_1071
132.2
P10809_1093
36.6
P10809_1103
140.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Monaco sample
nTPM
NK-cell nTPM: 20.1
Samples: 4
Max nTPM: 26.5
Min nTPM: 13.3
RHH5316_R3683
19.3
RHH5224_R3596
26.5
RHH5253_R3625
13.3
RHH5282_R3654
21.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Schmiedel sample id
TPM
NK-cell TPM: 12.9
Samples: 90
Max TPM: 27.3
Min TPM: 1.9
NK_1
27.3
NK_2
25.8
NK_3
25.1
NK_4
24.7
NK_5
24.4
NK_6
24.3
NK_7
23.7
NK_8
23.3
NK_9
21.6
NK_10
21.0
NK_11
21.0
NK_12
20.9
NK_13
19.8
NK_14
19.7
NK_15
19.6
NK_16
19.4
NK_17
18.9
NK_18
18.8
NK_19
18.7
NK_20
18.6
NK_21
16.9
NK_22
16.7
NK_23
16.0
NK_24
15.6
NK_25
15.5
NK_26
15.5
NK_27
15.4
NK_28
15.4
NK_29
15.2
NK_30
15.2
NK_31
15.2
NK_32
15.2
NK_33
15.0
NK_34
14.9
NK_35
14.9
NK_36
14.7
NK_37
14.1
NK_38
13.9
NK_39
13.8
NK_40
13.4
NK_41
13.3
NK_42
13.1
NK_43
13.1
NK_44
13.1
NK_45
12.9
NK_46
12.9
NK_47
12.8
NK_48
12.3
NK_49
12.0
NK_50
11.7
NK_51
11.6
NK_52
10.7
NK_53
10.1
NK_54
10.0
NK_55
9.9
NK_56
9.9
NK_57
9.8
NK_58
9.8
NK_59
9.8
NK_60
9.5
NK_61
9.4
NK_62
8.9
NK_63
8.7
NK_64
8.6
NK_65
8.6
NK_66
8.5
NK_67
8.4
NK_68
7.7
NK_69
7.4
NK_70
7.2
NK_71
7.1
NK_72
6.8
NK_73
6.5
NK_74
6.3
NK_75
6.2
NK_76
6.2
NK_77
6.1
NK_78
6.1
NK_79
5.8
NK_80
5.7
NK_81
5.5
NK_82
5.2
NK_83
5.1
NK_84
4.9
NK_85
4.8
NK_86
4.6
NK_87
4.5
NK_88
3.8
NK_89
3.0
NK_90
1.9
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