A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
162.5
nTPM
Monaco:
52.7
nTPM
Schmiedel:
18.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
162.5
HPA sample
nTPM
Classical monocyte nTPM: 162.5
Samples: 6
Max nTPM: 208.0
Min nTPM: 120.6
P10809_1003
120.6
P10809_1020
161.8
P10809_1039
196.5
P10809_1058
150.2
P10809_1080
138.1
P10809_1107
208.0
Intermediate monocyte nTPM: 158.9
Samples: 6
Max nTPM: 237.4
Min nTPM: 88.9
P10809_1004
88.9
P10809_1023
151.2
P10809_1042
198.7
P10809_1061
138.3
P10809_1081
139.1
P10809_1108
237.4
Non-classical monocyte nTPM: 96.3
Samples: 5
Max nTPM: 150.4
Min nTPM: 58.7
P10809_1005
77.9
P10809_1053
86.8
P10809_1072
58.7
P10809_1082
107.6
P10809_1109
150.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.7
Monaco sample
nTPM
Classical monocyte nTPM: 42.3
Samples: 4
Max nTPM: 48.0
Min nTPM: 31.3
RHH5313_R3680
42.8
RHH5221_R3593
31.3
RHH5250_R3622
47.3
RHH5279_R3651
48.0
Intermediate monocyte nTPM: 52.8
Samples: 4
Max nTPM: 68.9
Min nTPM: 30.9
RHH5314_R3681
68.9
RHH5222_R3594
53.8
RHH5251_R3623
30.9
RHH5280_R3652
57.4
Non-classical monocyte nTPM: 30.5
Samples: 4
Max nTPM: 32.3
Min nTPM: 27.3
RHH5315_R3682
31.1
RHH5223_R3595
27.3
RHH5252_R3624
32.3
RHH5281_R3653
31.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
Schmiedel sample id
TPM
Classical monocyte TPM: 18.3
Samples: 91
Max TPM: 36.7
Min TPM: 5.9
MONOCYTES_1
36.7
MONOCYTES_2
32.9
MONOCYTES_3
32.0
MONOCYTES_4
31.5
MONOCYTES_5
30.7
MONOCYTES_6
30.4
MONOCYTES_7
29.7
MONOCYTES_8
29.6
MONOCYTES_9
29.2
MONOCYTES_10
29.1
MONOCYTES_11
28.8
MONOCYTES_12
28.5
MONOCYTES_13
27.5
MONOCYTES_14
27.0
MONOCYTES_15
26.1
MONOCYTES_16
26.0
MONOCYTES_17
26.0
MONOCYTES_18
25.9
MONOCYTES_19
25.6
MONOCYTES_20
25.1
MONOCYTES_21
24.9
MONOCYTES_22
24.6
MONOCYTES_23
24.3
MONOCYTES_24
23.8
MONOCYTES_25
23.5
MONOCYTES_26
23.1
MONOCYTES_27
23.1
MONOCYTES_28
22.4
MONOCYTES_29
21.9
MONOCYTES_30
21.8
MONOCYTES_31
21.7
MONOCYTES_32
20.6
MONOCYTES_33
19.9
MONOCYTES_34
19.7
MONOCYTES_35
19.4
MONOCYTES_36
19.3
MONOCYTES_37
18.8
MONOCYTES_38
18.6
MONOCYTES_39
18.6
MONOCYTES_40
18.5
MONOCYTES_41
18.2
MONOCYTES_42
17.8
MONOCYTES_43
17.7
MONOCYTES_44
17.6
MONOCYTES_45
17.5
MONOCYTES_46
17.3
MONOCYTES_47
16.3
MONOCYTES_48
16.3
MONOCYTES_49
16.1
MONOCYTES_50
15.9
MONOCYTES_51
15.6
MONOCYTES_52
15.2
MONOCYTES_53
15.1
MONOCYTES_54
15.1
MONOCYTES_55
15.0
MONOCYTES_56
14.9
MONOCYTES_57
14.7
MONOCYTES_58
14.5
MONOCYTES_59
14.5
MONOCYTES_60
14.4
MONOCYTES_61
14.3
MONOCYTES_62
14.0
MONOCYTES_63
13.9
MONOCYTES_64
13.4
MONOCYTES_65
13.2
MONOCYTES_66
13.1
MONOCYTES_67
13.1
MONOCYTES_68
13.0
MONOCYTES_69
12.7
MONOCYTES_70
12.5
MONOCYTES_71
12.1
MONOCYTES_72
11.8
MONOCYTES_73
11.6
MONOCYTES_74
11.6
MONOCYTES_75
11.4
MONOCYTES_76
11.2
MONOCYTES_77
11.1
MONOCYTES_78
10.9
MONOCYTES_79
10.4
MONOCYTES_80
10.3
MONOCYTES_81
10.2
MONOCYTES_82
10.1
MONOCYTES_83
10.0
MONOCYTES_84
9.7
MONOCYTES_85
9.3
MONOCYTES_86
9.1
MONOCYTES_87
8.6
MONOCYTES_88
8.0
MONOCYTES_89
7.8
MONOCYTES_90
6.8
MONOCYTES_91
5.9
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Non-classical monocyte TPM: 9.0
Samples: 90
Max TPM: 18.9
Min TPM: 1.7
M2_1
18.9
M2_2
18.8
M2_3
18.6
M2_4
18.2
M2_5
18.0
M2_6
17.1
M2_7
17.0
M2_8
16.6
M2_9
16.2
M2_10
15.7
M2_11
15.7
M2_12
14.5
M2_13
14.2
M2_14
14.1
M2_15
13.6
M2_16
13.3
M2_17
13.3
M2_18
13.1
M2_19
12.5
M2_20
12.3
M2_21
12.2
M2_22
12.0
M2_23
12.0
M2_24
12.0
M2_25
11.7
M2_26
11.7
M2_27
11.2
M2_28
11.0
M2_29
11.0
M2_30
10.7
M2_31
10.6
M2_32
10.3
M2_33
10.2
M2_34
10.1
M2_35
10.1
M2_36
10.0
M2_37
10.0
M2_38
9.7
M2_39
9.3
M2_40
9.2
M2_41
9.1
M2_42
8.9
M2_43
8.7
M2_44
8.7
M2_45
8.7
M2_46
8.6
M2_47
8.3
M2_48
8.3
M2_49
8.2
M2_50
8.0
M2_51
7.4
M2_52
7.4
M2_53
7.4
M2_54
7.3
M2_55
6.9
M2_56
6.9
M2_57
6.8
M2_58
6.8
M2_59
6.6
M2_60
6.4
M2_61
6.3
M2_62
6.1
M2_63
5.9
M2_64
5.8
M2_65
5.8
M2_66
5.7
M2_67
5.6
M2_68
5.6
M2_69
5.6
M2_70
5.5
M2_71
5.4
M2_72
5.3
M2_73
5.0
M2_74
4.7
M2_75
4.5
M2_76
4.4
M2_77
4.2
M2_78
4.1
M2_79
3.7
M2_80
3.5
M2_81
3.5
M2_82
3.5
M2_83
3.5
M2_84
3.2
M2_85
2.8
M2_86
2.7
M2_87
2.4
M2_88
2.0
M2_89
1.9
M2_90
1.7
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