A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
9.7
nTPM
Schmiedel:
47.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
NK-cell nTPM: 1.2
Samples: 6
Max nTPM: 5.5
Min nTPM: 0.0
P10809_1013
0.6
P10809_1033
0.5
P10809_1052
0.0
P10809_1071
0.7
P10809_1093
0.0
P10809_1103
5.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
Monaco sample
nTPM
NK-cell nTPM: 9.7
Samples: 4
Max nTPM: 16.6
Min nTPM: 5.7
RHH5316_R3683
16.6
RHH5224_R3596
6.1
RHH5253_R3625
5.7
RHH5282_R3654
10.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.3
Schmiedel sample id
TPM
NK-cell TPM: 47.3
Samples: 90
Max TPM: 84.5
Min TPM: 15.8
NK_1
84.5
NK_2
78.9
NK_3
78.6
NK_4
76.8
NK_5
72.5
NK_6
71.7
NK_7
71.5
NK_8
70.6
NK_9
69.1
NK_10
66.6
NK_11
66.1
NK_12
64.9
NK_13
63.6
NK_14
63.5
NK_15
63.4
NK_16
63.1
NK_17
62.6
NK_18
62.6
NK_19
62.4
NK_20
61.7
NK_21
61.2
NK_22
61.1
NK_23
60.8
NK_24
60.6
NK_25
60.3
NK_26
60.2
NK_27
59.7
NK_28
58.7
NK_29
57.6
NK_30
55.9
NK_31
55.9
NK_32
53.3
NK_33
53.2
NK_34
53.1
NK_35
52.9
NK_36
52.7
NK_37
51.5
NK_38
51.2
NK_39
50.8
NK_40
50.4
NK_41
50.2
NK_42
50.1
NK_43
49.9
NK_44
48.1
NK_45
47.4
NK_46
46.6
NK_47
46.4
NK_48
46.2
NK_49
46.0
NK_50
44.4
NK_51
44.3
NK_52
44.1
NK_53
43.3
NK_54
42.9
NK_55
42.0
NK_56
41.4
NK_57
40.9
NK_58
39.8
NK_59
39.6
NK_60
39.3
NK_61
39.3
NK_62
39.1
NK_63
38.9
NK_64
38.0
NK_65
36.7
NK_66
36.0
NK_67
34.9
NK_68
34.8
NK_69
34.5
NK_70
34.4
NK_71
34.0
NK_72
33.1
NK_73
31.2
NK_74
30.4
NK_75
30.2
NK_76
29.2
NK_77
28.5
NK_78
28.3
NK_79
27.3
NK_80
27.1
NK_81
27.0
NK_82
26.3
NK_83
24.1
NK_84
20.8
NK_85
20.4
NK_86
19.9
NK_87
17.7
NK_88
17.1
NK_89
16.8
NK_90
15.8
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