A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
8.2
nTPM
Schmiedel:
31.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
Classical monocyte nTPM: 2.5
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
2.5
P10809_1039
4.0
P10809_1058
2.7
P10809_1080
1.2
P10809_1107
3.7
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 7.5
Min nTPM: 0.0
P10809_1004
2.9
P10809_1023
3.0
P10809_1042
2.1
P10809_1061
0.0
P10809_1081
0.7
P10809_1108
7.5
Non-classical monocyte nTPM: 3.5
Samples: 5
Max nTPM: 5.4
Min nTPM: 1.7
P10809_1005
3.2
P10809_1053
1.7
P10809_1072
5.4
P10809_1082
3.3
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
Monaco sample
nTPM
Classical monocyte nTPM: 7.3
Samples: 4
Max nTPM: 17.8
Min nTPM: 1.8
RHH5313_R3680
1.8
RHH5221_R3593
17.8
RHH5250_R3622
3.3
RHH5279_R3651
6.2
Intermediate monocyte nTPM: 8.1
Samples: 4
Max nTPM: 14.4
Min nTPM: 0.9
RHH5314_R3681
14.4
RHH5222_R3594
7.9
RHH5251_R3623
9.0
RHH5280_R3652
0.9
Non-classical monocyte nTPM: 8.2
Samples: 4
Max nTPM: 15.0
Min nTPM: 3.6
RHH5315_R3682
15.0
RHH5223_R3595
4.0
RHH5252_R3624
10.2
RHH5281_R3653
3.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
Classical monocyte TPM: 31.5
Samples: 91
Max TPM: 51.4
Min TPM: 11.4
MONOCYTES_1
51.4
MONOCYTES_2
49.1
MONOCYTES_3
48.5
MONOCYTES_4
47.1
MONOCYTES_5
46.8
MONOCYTES_6
46.0
MONOCYTES_7
44.2
MONOCYTES_8
43.7
MONOCYTES_9
43.5
MONOCYTES_10
42.9
MONOCYTES_11
42.5
MONOCYTES_12
42.4
MONOCYTES_13
42.4
MONOCYTES_14
41.2
MONOCYTES_15
41.2
MONOCYTES_16
40.5
MONOCYTES_17
39.6
MONOCYTES_18
39.6
MONOCYTES_19
39.6
MONOCYTES_20
39.0
MONOCYTES_21
38.8
MONOCYTES_22
38.5
MONOCYTES_23
38.4
MONOCYTES_24
38.3
MONOCYTES_25
37.9
MONOCYTES_26
37.9
MONOCYTES_27
36.9
MONOCYTES_28
36.8
MONOCYTES_29
36.7
MONOCYTES_30
36.4
MONOCYTES_31
36.3
MONOCYTES_32
36.0
MONOCYTES_33
35.5
MONOCYTES_34
35.3
MONOCYTES_35
34.6
MONOCYTES_36
34.3
MONOCYTES_37
34.2
MONOCYTES_38
34.2
MONOCYTES_39
33.6
MONOCYTES_40
33.5
MONOCYTES_41
32.9
MONOCYTES_42
32.8
MONOCYTES_43
32.5
MONOCYTES_44
32.4
MONOCYTES_45
31.1
MONOCYTES_46
30.7
MONOCYTES_47
30.5
MONOCYTES_48
30.4
MONOCYTES_49
30.4
MONOCYTES_50
30.1
MONOCYTES_51
30.0
MONOCYTES_52
29.9
MONOCYTES_53
29.8
MONOCYTES_54
29.5
MONOCYTES_55
28.4
MONOCYTES_56
28.1
MONOCYTES_57
27.7
MONOCYTES_58
27.3
MONOCYTES_59
27.2
MONOCYTES_60
26.9
MONOCYTES_61
26.6
MONOCYTES_62
26.5
MONOCYTES_63
26.5
MONOCYTES_64
26.3
MONOCYTES_65
26.2
MONOCYTES_66
26.0
MONOCYTES_67
24.7
MONOCYTES_68
24.0
MONOCYTES_69
23.6
MONOCYTES_70
23.5
MONOCYTES_71
23.4
MONOCYTES_72
22.7
MONOCYTES_73
22.2
MONOCYTES_74
22.0
MONOCYTES_75
21.8
MONOCYTES_76
21.6
MONOCYTES_77
21.6
MONOCYTES_78
21.3
MONOCYTES_79
21.3
MONOCYTES_80
21.2
MONOCYTES_81
21.2
MONOCYTES_82
20.5
MONOCYTES_83
20.3
MONOCYTES_84
20.3
MONOCYTES_85
20.0
MONOCYTES_86
19.9
MONOCYTES_87
18.2
MONOCYTES_88
18.1
MONOCYTES_89
17.8
MONOCYTES_90
16.3
MONOCYTES_91
11.4
Show allShow less
Non-classical monocyte TPM: 27.2
Samples: 90
Max TPM: 49.3
Min TPM: 6.8
M2_1
49.3
M2_2
48.7
M2_3
44.7
M2_4
43.9
M2_5
42.7
M2_6
42.6
M2_7
42.3
M2_8
42.0
M2_9
41.1
M2_10
40.4
M2_11
39.9
M2_12
39.5
M2_13
39.2
M2_14
38.4
M2_15
36.8
M2_16
36.3
M2_17
36.2
M2_18
35.6
M2_19
33.9
M2_20
33.8
M2_21
32.9
M2_22
32.7
M2_23
32.7
M2_24
32.5
M2_25
32.4
M2_26
32.2
M2_27
31.8
M2_28
31.8
M2_29
31.7
M2_30
31.5
M2_31
30.4
M2_32
30.3
M2_33
30.3
M2_34
30.1
M2_35
30.0
M2_36
29.7
M2_37
29.7
M2_38
29.7
M2_39
29.4
M2_40
28.9
M2_41
28.9
M2_42
28.9
M2_43
28.7
M2_44
27.6
M2_45
27.5
M2_46
27.4
M2_47
26.9
M2_48
26.8
M2_49
26.5
M2_50
25.9
M2_51
25.7
M2_52
25.1
M2_53
24.9
M2_54
24.6
M2_55
24.4
M2_56
24.3
M2_57
24.3
M2_58
24.1
M2_59
23.7
M2_60
23.5
M2_61
23.4
M2_62
23.0
M2_63
22.7
M2_64
21.8
M2_65
21.8
M2_66
21.5
M2_67
20.9
M2_68
20.8
M2_69
20.0
M2_70
19.7
M2_71
19.4
M2_72
19.4
M2_73
18.6
M2_74
18.4
M2_75
18.1
M2_76
18.0
M2_77
17.5
M2_78
15.7
M2_79
14.5
M2_80
14.1
M2_81
14.0
M2_82
12.8
M2_83
12.8
M2_84
12.4
M2_85
12.4
M2_86
12.1
M2_87
10.7
M2_88
9.6
M2_89
7.2
M2_90
6.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
