MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA Brain:37.5 nTPM
GTEx:23.1 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:56.4 nTPM
Mouse:37.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.1
2586 Male, age 75, left hemisphere 47.5
2019 Male, age 18, unknown 42.6
2666 Male, age 74, left hemisphere 37.2
2219 Male, age 76, both hemispheres 35.2
2828 Female, age 72, unknown 34.8
2411 Female, age 72, unknown 33.4
1827 Male, age 72, unknown 32.0
1830 Male, age 51, unknown 31.1
1833 Male, age 53, unknown 30.3
1870 Female, age 42, unknown 27.4
Dorsal raphe nucleus
nTPM: 34.0
1828 Male, age 53, unknown 38.7
2047 Male, age 72, unknown 37.5
2298 Female, age 72, unknown 35.3
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 29.3
1848 Female, age 42, unknown 30.0
2097 Female, age 72, unknown 29.4
2849 Male, age 72, unknown 29.2
1890 Male, age 53, unknown 28.7
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Periaquaductal grey, anterior
nTPM: 35.8
2502 Female, age 75, unknown 39.9
1795 Male, age 51, unknown 34.6
1947 Male, age 18, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 28.2
2464 Female, age 72, unknown 31.1
1831 Male, age 72, unknown 28.7
1840 Male, age 53, unknown 28.4
2850 Male, age 76, both hemispheres 24.5
Periaquaductal grey, lateral
nTPM: 27.5
2272 Male, age 74, both hemispheres 28.9
2053 Male, age 18, unknown 26.8
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 33.0
2007 Male, age 72, unknown 42.0
1817 Female, age 42, unknown 39.0
1944 Female, age 72, unknown 37.1
1816 Male, age 51, unknown 35.3
2407 Male, age 75, both hemispheres 32.8
2667 Female, age 75, unknown 31.9
2224 Female, age 72, unknown 31.4
1815 Male, age 53, unknown 30.9
2825 Male, age 18, unknown 28.8
2273 Male, age 74, both hemispheres 27.2
2316 Male, age 76, right hemisphere 26.7
Red nucleus
nTPM: 31.5
2584 Male, age 75, left hemisphere 40.0
2785 Male, age 18, unknown 36.2
2588 Male, age 74, left hemisphere 34.4
2769 Male, age 72, unknown 32.0
2227 Male, age 72, unknown 31.3
1821 Female, age 72, unknown 30.6
2823 Male, age 76, right hemisphere 30.0
2503 Female, age 72, unknown 29.8
1954 Female, age 42, unknown 28.8
1904 Male, age 53, unknown 28.3
2725 Female, age 75, unknown 28.3
1865 Male, age 51, unknown 28.1
Substantia nigra
nTPM: 37.5
1916 Female, age 42, unknown 46.2
2665 Male, age 74, both hemispheres 44.1
1941 Male, age 53, unknown 43.2
1851 Male, age 51, unknown 39.4
1889 Female, age 72, unknown 36.1
2699 Male, age 18, unknown 35.8
2590 Female, age 75, unknown 33.6
2583 Male, age 75, right hemisphere 32.8
2241 Male, age 72, unknown 32.3
2409 Female, age 72, unknown 31.7
Superior colliculus
nTPM: 32.4
2664 Male, age 75, both hemispheres 44.1
2087 Female, age 72, unknown 37.3
2668 Female, age 75, unknown 35.9
1839 Male, age 51, unknown 32.7
1796 Male, age 53, unknown 32.5
2587 Male, age 74, left hemisphere 30.2
2261 Male, age 18, unknown 29.5
1895 Male, age 76, right hemisphere 29.3
1995 Male, age 72, unknown 26.9
1913 Female, age 42, unknown 25.5
Ventral tegmental area
nTPM: 34.0
1942 Male, age 51, unknown 37.2
2410 Female, age 72, unknown 37.2
2218 Male, age 76, both hemispheres 34.6
2021 Male, age 53, unknown 33.7
1915 Female, age 42, unknown 33.0
2223 Female, age 72, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 183

Max nTPM: 43.2
Min nTPM: 9.5
Std nTPM: 6.4
Median nTPM: 22.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 40.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 39.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 38.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 36.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 36.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 34.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 32.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.1
Samples: 4

Max nTPM: 59.9
Min nTPM: 44.9
Sample A Female 59.9
Sample B Female 48.3
Sample C Male 44.9
Sample D Male 47.2
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 67.9
Min nTPM: 45.7
Sample A Female 67.9
Sample B Female 45.7
Sample C Male 46.1
Sample D Male 50.8
Periaqueductal gray
nTPM: 45.8
Samples: 3

Max nTPM: 47.4
Min nTPM: 44.2
Sample B Female 45.9
Sample C Male 47.4
Sample D Male 44.2
Superior colliculi
nTPM: 56.4
Samples: 4

Max nTPM: 61.2
Min nTPM: 50.9
Sample A Female 60.5
Sample B Female 61.2
Sample C Male 53.0
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 44.6
Min nTPM: 31.6
Sample A Male 44.6
Sample B Male 35.2
Sample C Female 31.6
Sample D Female 37.4

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