A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.6
nTPM
Monaco:
70.9
nTPM
Schmiedel:
19.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
HPA sample
nTPM
Memory B-cell nTPM: 18.3
Samples: 6
Max nTPM: 27.4
Min nTPM: 12.6
P10809_1017
12.6
P10809_1025
27.4
P10809_1044
21.1
P10809_1063
18.2
P10809_1092
13.4
P10809_1105
17.3
Naive B-cell nTPM: 19.6
Samples: 6
Max nTPM: 35.9
Min nTPM: 8.5
P10809_1011
10.4
P10809_1029
35.9
P10809_1048
20.5
P10809_1067
8.5
P10809_1091
23.4
P10809_1104
19.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 67.4
Samples: 4
Max nTPM: 107.3
Min nTPM: 22.2
RHH5310_R3677
107.3
RHH5218_R3590
92.9
RHH5247_R3619
47.0
RHH5276_R3648
22.2
Naive B-cell nTPM: 48.7
Samples: 4
Max nTPM: 63.4
Min nTPM: 29.4
RHH5308_R3675
29.4
RHH5216_R3588
54.3
RHH5245_R3617
47.6
RHH5274_R3646
63.4
Non-switched memory B-cell nTPM: 58.4
Samples: 4
Max nTPM: 61.7
Min nTPM: 54.3
RHH5309_R3676
57.9
RHH5217_R3589
59.6
RHH5246_R3618
61.7
RHH5275_R3647
54.3
Plasmablast nTPM: 70.9
Samples: 4
Max nTPM: 109.6
Min nTPM: 39.0
RHH5312_R3679
55.6
RHH5220_R3592
79.4
RHH5249_R3621
109.6
RHH5278_R3650
39.0
Switched memory B-cell nTPM: 42.5
Samples: 4
Max nTPM: 51.8
Min nTPM: 36.5
RHH5311_R3678
51.8
RHH5219_R3591
36.5
RHH5248_R3620
42.1
RHH5277_R3649
39.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.5
Schmiedel sample id
TPM
Naive B-cell TPM: 19.5
Samples: 91
Max TPM: 35.6
Min TPM: 5.0
B_CELL_NAIVE_1
35.6
B_CELL_NAIVE_2
33.4
B_CELL_NAIVE_3
32.4
B_CELL_NAIVE_4
31.9
B_CELL_NAIVE_5
30.2
B_CELL_NAIVE_6
30.2
B_CELL_NAIVE_7
29.1
B_CELL_NAIVE_8
28.1
B_CELL_NAIVE_9
27.9
B_CELL_NAIVE_10
27.6
B_CELL_NAIVE_11
27.4
B_CELL_NAIVE_12
27.2
B_CELL_NAIVE_13
27.1
B_CELL_NAIVE_14
26.9
B_CELL_NAIVE_15
26.7
B_CELL_NAIVE_16
26.3
B_CELL_NAIVE_17
25.9
B_CELL_NAIVE_18
25.7
B_CELL_NAIVE_19
25.6
B_CELL_NAIVE_20
25.5
B_CELL_NAIVE_21
25.1
B_CELL_NAIVE_22
24.7
B_CELL_NAIVE_23
24.3
B_CELL_NAIVE_24
24.3
B_CELL_NAIVE_25
24.2
B_CELL_NAIVE_26
23.8
B_CELL_NAIVE_27
23.4
B_CELL_NAIVE_28
23.4
B_CELL_NAIVE_29
23.4
B_CELL_NAIVE_30
23.4
B_CELL_NAIVE_31
23.3
B_CELL_NAIVE_32
22.8
B_CELL_NAIVE_33
22.7
B_CELL_NAIVE_34
22.2
B_CELL_NAIVE_35
22.1
B_CELL_NAIVE_36
22.0
B_CELL_NAIVE_37
21.6
B_CELL_NAIVE_38
21.5
B_CELL_NAIVE_39
21.1
B_CELL_NAIVE_40
20.9
B_CELL_NAIVE_41
20.9
B_CELL_NAIVE_42
20.8
B_CELL_NAIVE_43
20.4
B_CELL_NAIVE_44
20.1
B_CELL_NAIVE_45
20.0
B_CELL_NAIVE_46
19.9
B_CELL_NAIVE_47
19.7
B_CELL_NAIVE_48
19.7
B_CELL_NAIVE_49
19.3
B_CELL_NAIVE_50
19.1
B_CELL_NAIVE_51
18.6
B_CELL_NAIVE_52
18.1
B_CELL_NAIVE_53
18.0
B_CELL_NAIVE_54
17.7
B_CELL_NAIVE_55
17.6
B_CELL_NAIVE_56
17.6
B_CELL_NAIVE_57
17.5
B_CELL_NAIVE_58
17.5
B_CELL_NAIVE_59
17.4
B_CELL_NAIVE_60
17.3
B_CELL_NAIVE_61
17.2
B_CELL_NAIVE_62
17.1
B_CELL_NAIVE_63
17.1
B_CELL_NAIVE_64
15.5
B_CELL_NAIVE_65
15.2
B_CELL_NAIVE_66
15.2
B_CELL_NAIVE_67
15.2
B_CELL_NAIVE_68
15.0
B_CELL_NAIVE_69
14.7
B_CELL_NAIVE_70
14.2
B_CELL_NAIVE_71
13.7
B_CELL_NAIVE_72
13.5
B_CELL_NAIVE_73
13.2
B_CELL_NAIVE_74
13.0
B_CELL_NAIVE_75
12.1
B_CELL_NAIVE_76
12.0
B_CELL_NAIVE_77
11.3
B_CELL_NAIVE_78
11.3
B_CELL_NAIVE_79
10.8
B_CELL_NAIVE_80
10.7
B_CELL_NAIVE_81
10.6
B_CELL_NAIVE_82
10.1
B_CELL_NAIVE_83
9.9
B_CELL_NAIVE_84
9.7
B_CELL_NAIVE_85
8.7
B_CELL_NAIVE_86
8.5
B_CELL_NAIVE_87
7.7
B_CELL_NAIVE_88
6.2
B_CELL_NAIVE_89
5.8
B_CELL_NAIVE_90
5.3
B_CELL_NAIVE_91
5.0
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