A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
50.9
nTPM
Monaco:
90.5
nTPM
Schmiedel:
47.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.9
HPA sample
nTPM
Classical monocyte nTPM: 50.9
Samples: 6
Max nTPM: 114.3
Min nTPM: 14.2
P10809_1003
48.0
P10809_1020
65.8
P10809_1039
114.3
P10809_1058
14.2
P10809_1080
22.7
P10809_1107
40.6
Intermediate monocyte nTPM: 34.1
Samples: 6
Max nTPM: 55.8
Min nTPM: 15.4
P10809_1004
39.2
P10809_1023
55.8
P10809_1042
54.3
P10809_1061
16.8
P10809_1081
15.4
P10809_1108
22.8
Non-classical monocyte nTPM: 39.1
Samples: 5
Max nTPM: 73.1
Min nTPM: 13.0
P10809_1005
28.4
P10809_1053
73.1
P10809_1072
35.6
P10809_1082
13.0
P10809_1109
45.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.5
Monaco sample
nTPM
Classical monocyte nTPM: 90.5
Samples: 4
Max nTPM: 108.8
Min nTPM: 65.4
RHH5313_R3680
65.4
RHH5221_R3593
108.8
RHH5250_R3622
93.9
RHH5279_R3651
93.9
Intermediate monocyte nTPM: 71.6
Samples: 4
Max nTPM: 111.3
Min nTPM: 47.0
RHH5314_R3681
111.3
RHH5222_R3594
47.0
RHH5251_R3623
63.0
RHH5280_R3652
65.2
Non-classical monocyte nTPM: 69.4
Samples: 4
Max nTPM: 78.5
Min nTPM: 61.0
RHH5315_R3682
78.5
RHH5223_R3595
61.0
RHH5252_R3624
66.1
RHH5281_R3653
71.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.8
Schmiedel sample id
TPM
Classical monocyte TPM: 47.8
Samples: 91
Max TPM: 80.2
Min TPM: 21.1
MONOCYTES_1
80.2
MONOCYTES_2
76.9
MONOCYTES_3
73.3
MONOCYTES_4
71.3
MONOCYTES_5
71.1
MONOCYTES_6
70.7
MONOCYTES_7
70.4
MONOCYTES_8
69.7
MONOCYTES_9
68.1
MONOCYTES_10
67.5
MONOCYTES_11
67.0
MONOCYTES_12
65.8
MONOCYTES_13
65.6
MONOCYTES_14
65.2
MONOCYTES_15
63.5
MONOCYTES_16
62.9
MONOCYTES_17
62.6
MONOCYTES_18
62.3
MONOCYTES_19
62.0
MONOCYTES_20
61.8
MONOCYTES_21
61.3
MONOCYTES_22
60.5
MONOCYTES_23
59.9
MONOCYTES_24
59.6
MONOCYTES_25
58.8
MONOCYTES_26
58.7
MONOCYTES_27
57.7
MONOCYTES_28
57.4
MONOCYTES_29
57.3
MONOCYTES_30
56.9
MONOCYTES_31
56.3
MONOCYTES_32
55.8
MONOCYTES_33
55.6
MONOCYTES_34
55.1
MONOCYTES_35
54.8
MONOCYTES_36
52.4
MONOCYTES_37
52.1
MONOCYTES_38
51.2
MONOCYTES_39
50.8
MONOCYTES_40
50.7
MONOCYTES_41
49.7
MONOCYTES_42
48.5
MONOCYTES_43
47.4
MONOCYTES_44
47.2
MONOCYTES_45
46.6
MONOCYTES_46
46.0
MONOCYTES_47
46.0
MONOCYTES_48
46.0
MONOCYTES_49
45.9
MONOCYTES_50
44.9
MONOCYTES_51
44.6
MONOCYTES_52
43.5
MONOCYTES_53
43.0
MONOCYTES_54
42.5
MONOCYTES_55
41.6
MONOCYTES_56
41.1
MONOCYTES_57
40.9
MONOCYTES_58
40.4
MONOCYTES_59
40.1
MONOCYTES_60
40.1
MONOCYTES_61
38.7
MONOCYTES_62
37.7
MONOCYTES_63
37.6
MONOCYTES_64
37.2
MONOCYTES_65
37.1
MONOCYTES_66
37.0
MONOCYTES_67
36.5
MONOCYTES_68
36.5
MONOCYTES_69
36.4
MONOCYTES_70
36.2
MONOCYTES_71
36.1
MONOCYTES_72
36.0
MONOCYTES_73
35.4
MONOCYTES_74
34.9
MONOCYTES_75
34.2
MONOCYTES_76
34.0
MONOCYTES_77
31.3
MONOCYTES_78
31.3
MONOCYTES_79
30.5
MONOCYTES_80
29.7
MONOCYTES_81
28.0
MONOCYTES_82
27.5
MONOCYTES_83
27.4
MONOCYTES_84
26.1
MONOCYTES_85
25.4
MONOCYTES_86
25.2
MONOCYTES_87
24.9
MONOCYTES_88
24.7
MONOCYTES_89
24.6
MONOCYTES_90
24.4
MONOCYTES_91
21.1
Show allShow less
Non-classical monocyte TPM: 30.8
Samples: 90
Max TPM: 60.8
Min TPM: 8.2
M2_1
60.8
M2_2
56.8
M2_3
53.4
M2_4
52.3
M2_5
51.5
M2_6
51.0
M2_7
50.0
M2_8
49.8
M2_9
47.7
M2_10
47.4
M2_11
46.4
M2_12
44.1
M2_13
43.9
M2_14
43.3
M2_15
43.2
M2_16
43.0
M2_17
41.9
M2_18
41.7
M2_19
40.6
M2_20
39.9
M2_21
39.4
M2_22
39.4
M2_23
38.5
M2_24
38.3
M2_25
38.1
M2_26
37.8
M2_27
37.0
M2_28
36.8
M2_29
36.8
M2_30
36.7
M2_31
36.6
M2_32
35.9
M2_33
34.8
M2_34
34.7
M2_35
34.5
M2_36
34.2
M2_37
34.2
M2_38
33.9
M2_39
33.6
M2_40
32.9
M2_41
32.5
M2_42
32.1
M2_43
31.2
M2_44
31.2
M2_45
30.5
M2_46
30.1
M2_47
30.0
M2_48
30.0
M2_49
29.7
M2_50
29.7
M2_51
29.1
M2_52
28.6
M2_53
28.3
M2_54
28.1
M2_55
27.3
M2_56
27.0
M2_57
26.9
M2_58
26.9
M2_59
26.4
M2_60
26.2
M2_61
25.8
M2_62
24.9
M2_63
23.6
M2_64
22.6
M2_65
22.0
M2_66
21.9
M2_67
21.7
M2_68
21.2
M2_69
20.1
M2_70
20.1
M2_71
19.9
M2_72
19.7
M2_73
19.3
M2_74
18.0
M2_75
17.5
M2_76
17.2
M2_77
16.3
M2_78
15.7
M2_79
15.4
M2_80
15.4
M2_81
14.8
M2_82
14.8
M2_83
14.2
M2_84
12.8
M2_85
12.6
M2_86
12.4
M2_87
11.9
M2_88
8.8
M2_89
8.8
M2_90
8.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
