BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.7 nTPM
HPA Brain:232.2 nTPM
GTEx:70.7 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Mouse:182.6 nTPM
Rat:149.7 nTPM
Pig:119.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 232.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 184.3
2019 Male, age 18, unknown 398.2
2586 Male, age 75, left hemisphere 197.7
2666 Male, age 74, left hemisphere 191.7
2411 Female, age 72, unknown 173.1
2828 Female, age 72, unknown 168.9
1833 Male, age 53, unknown 158.6
1830 Male, age 51, unknown 152.0
2219 Male, age 76, both hemispheres 141.8
1870 Female, age 42, unknown 141.2
1827 Male, age 72, unknown 119.9
Dorsal raphe nucleus
nTPM: 122.9
2750 Male, age 76, both hemispheres 179.1
1828 Male, age 53, unknown 142.2
2047 Male, age 72, unknown 105.9
2016 Female, age 72, unknown 102.6
2298 Female, age 72, unknown 84.6
Inferior colliculus
nTPM: 137.1
1890 Male, age 53, unknown 166.6
2097 Female, age 72, unknown 152.2
1848 Female, age 42, unknown 123.4
2849 Male, age 72, unknown 106.2
Median raphe nucleus
nTPM: 109.2
2220 Male, age 76, midline 109.2
Periaquaductal grey, anterior
nTPM: 126.4
2502 Female, age 75, unknown 138.8
1795 Male, age 51, unknown 123.1
1947 Male, age 18, unknown 117.4
Periaquaductal grey, dorsal
nTPM: 84.5
2464 Female, age 72, unknown 130.4
1831 Male, age 72, unknown 89.9
1840 Male, age 53, unknown 67.9
2850 Male, age 76, both hemispheres 49.6
Periaquaductal grey, lateral
nTPM: 82.5
2272 Male, age 74, both hemispheres 115.1
2053 Male, age 18, unknown 73.1
2140 Male, age 76, both hemispheres 59.2
Pretectal area
nTPM: 186.5
2007 Male, age 72, unknown 383.3
1817 Female, age 42, unknown 333.6
1944 Female, age 72, unknown 263.5
1815 Male, age 53, unknown 226.3
1816 Male, age 51, unknown 225.7
2667 Female, age 75, unknown 162.0
2316 Male, age 76, right hemisphere 111.5
2407 Male, age 75, both hemispheres 100.4
2273 Male, age 74, both hemispheres 95.2
2825 Male, age 18, unknown 76.6
2224 Female, age 72, unknown 73.1
Red nucleus
nTPM: 232.2
2785 Male, age 18, unknown 421.3
2588 Male, age 74, left hemisphere 289.5
2769 Male, age 72, unknown 241.1
2227 Male, age 72, unknown 233.1
2823 Male, age 76, right hemisphere 228.9
1904 Male, age 53, unknown 223.8
2503 Female, age 72, unknown 220.9
2584 Male, age 75, left hemisphere 206.8
1865 Male, age 51, unknown 200.8
1821 Female, age 72, unknown 197.4
1954 Female, age 42, unknown 187.3
2725 Female, age 75, unknown 136.0
Substantia nigra
nTPM: 151.4
1889 Female, age 72, unknown 250.2
2583 Male, age 75, right hemisphere 171.5
1916 Female, age 42, unknown 170.1
1941 Male, age 53, unknown 152.4
1851 Male, age 51, unknown 152.0
2590 Female, age 75, unknown 151.8
2665 Male, age 74, both hemispheres 147.9
2409 Female, age 72, unknown 128.0
2241 Male, age 72, unknown 102.5
2699 Male, age 18, unknown 87.6
Superior colliculus
nTPM: 149.7
2668 Female, age 75, unknown 207.8
2087 Female, age 72, unknown 202.3
2587 Male, age 74, left hemisphere 164.4
1913 Female, age 42, unknown 145.3
1895 Male, age 76, right hemisphere 144.8
1995 Male, age 72, unknown 141.0
2261 Male, age 18, unknown 136.5
1839 Male, age 51, unknown 131.1
1796 Male, age 53, unknown 125.7
2664 Male, age 75, both hemispheres 98.4
Ventral tegmental area
nTPM: 137.2
2410 Female, age 72, unknown 178.9
2223 Female, age 72, unknown 163.3
2218 Male, age 76, both hemispheres 137.2
1942 Male, age 51, unknown 133.1
1915 Female, age 42, unknown 119.5
2021 Male, age 53, unknown 91.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.7
Samples: 183

Max nTPM: 163.8
Min nTPM: 6.8
Std nTPM: 29.8
Median nTPM: 68.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 163.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 157.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 152.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 149.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 146.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 135.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 131.9
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 119.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 119.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 117.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 116.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.9
Samples: 3

Max nTPM: 99.5
Min nTPM: 40.0
Sample A Female 99.5
Sample B Female 40.0
Sample C Male 73.1
Midbrain
nTPM: 103.8
Samples: 3

Max nTPM: 135.4
Min nTPM: 68.0
Sample B Female 68.0
Sample C Male 135.4
Sample D Male 107.9
Periaqueductal gray
nTPM: 58.7
Samples: 3

Max nTPM: 71.8
Min nTPM: 43.2
Sample B Female 71.8
Sample C Male 61.1
Sample D Male 43.2
Superior colliculi
nTPM: 119.1
Samples: 4

Max nTPM: 152.1
Min nTPM: 57.0
Sample A Female 152.1
Sample B Female 57.0
Sample C Male 148.3
Sample D Male 119.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 182.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.6
Samples: 4

Max nTPM: 193.0
Min nTPM: 163.8
Sample A 163.8
Sample B 191.1
Sample C 193.0
Sample D 182.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 149.7
Rat sample Sample description nTPM
Midbrain
nTPM: 149.7
Samples: 4

Max nTPM: 158.5
Min nTPM: 137.6
Sample A 151.7
Sample A 158.5
Sample A 151.1
Sample A 137.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo