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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:86.2 nTPM
HPA Brain:125.8 nTPM
GTEx:86.2 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:62.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 125.8
2565 Male, age 75, midline 205.6
2816 Male, age 47, midline 127.5
2048 Male, age 55, midline 101.0
2194 Female, age 79, both hemispheres 98.7
1981 Female, age 72, midline 96.0
Cervical spinal cord, dorsal horn
nTPM: 116.9
2721 Male, age 90, both hemispheres 134.7
2297 Male, age 75, both hemispheres 133.2
1877 Male, age 55, unknown 124.2
2296 Male, age 66, both hemispheres 117.4
2173 Female, age 72, unknown 96.8
2069 Male, age 47, both hemispheres 95.3
Cervical spinal cord, ventral horn
nTPM: 123.0
2480 Male, age 75, both hemispheres 166.5
2809 Male, age 90, both hemispheres 153.5
2295 Male, age 66, both hemispheres 120.1
2820 Female, age 79, both hemispheres 113.5
2068 Male, age 55, unknown 104.8
2098 Female, age 72, unknown 79.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 86.2
Samples: 204

Max nTPM: 231.2
Min nTPM: 36.4
Std nTPM: 28.8
Median nTPM: 80.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 231.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 192.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 186.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 170.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 170.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 168.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 154.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 142.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 137.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 137.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 136.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 133.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 130.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 129.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 128.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 127.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 126.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 126.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 126.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 124.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 124.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 123.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 121.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 120.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 119.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 118.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 118.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 115.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 113.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 111.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 110.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 109.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 107.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 106.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 105.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 105.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 105.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 104.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 103.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 103.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 102.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 102.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 102.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 101.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 101.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 100.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 98.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 98.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 98.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 98.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 98.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 97.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 95.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 95.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 95.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 95.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 94.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 93.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 93.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 92.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 92.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 92.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 92.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 91.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 91.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 90.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 90.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 89.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 89.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 89.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 88.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 88.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 87.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 87.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 86.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 86.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 86.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 85.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 85.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 85.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 84.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 84.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 84.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 83.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 82.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 82.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 82.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 82.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 82.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 82.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 81.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 81.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 81.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 80.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 80.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 80.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 80.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 79.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 79.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 79.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 79.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 78.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 78.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 78.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 77.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 76.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 76.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 75.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 75.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 74.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 74.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 74.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 74.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 74.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 74.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 73.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 73.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 73.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 72.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 72.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 71.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 71.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 71.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 71.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 71.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 70.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 70.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 70.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 70.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 70.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 70.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 69.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 69.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 69.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 69.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 68.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 68.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 68.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 67.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 66.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 66.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 65.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 65.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 64.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 63.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 63.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 62.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 62.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 61.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 60.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 59.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 59.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 59.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 59.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 59.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 58.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 58.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 58.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 58.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 58.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 57.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 57.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 57.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 57.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 55.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 54.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 53.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 53.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 53.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 52.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 52.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 50.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 50.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 47.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 47.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 47.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 47.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 44.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 44.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 36.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 36.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 50.1
FF:10181-103D1 60 years, female 54.9
FF:10159-103A6 76 years, female 45.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.3
Samples: 4

Max nTPM: 56.8
Min nTPM: 43.5
Sample A Female 56.8
Sample B Female 43.5
Sample C Male 49.3
Sample D Male 51.7
Ventral spinal cord
nTPM: 62.7
Samples: 4

Max nTPM: 66.8
Min nTPM: 59.7
Sample A Female 66.8
Sample B Female 59.7
Sample C Male 61.3
Sample D Male 62.8

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