A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
17.1
nTPM
Schmiedel:
26.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
NK-cell nTPM: 6.5
Samples: 6
Max nTPM: 17.2
Min nTPM: 3.5
P10809_1013
3.7
P10809_1033
5.4
P10809_1052
3.5
P10809_1071
5.3
P10809_1093
17.2
P10809_1103
3.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.1
Monaco sample
nTPM
NK-cell nTPM: 17.1
Samples: 4
Max nTPM: 19.4
Min nTPM: 14.0
RHH5316_R3683
14.0
RHH5224_R3596
19.4
RHH5253_R3625
18.7
RHH5282_R3654
16.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Schmiedel sample id
TPM
NK-cell TPM: 26.8
Samples: 90
Max TPM: 34.4
Min TPM: 20.2
NK_1
34.4
NK_2
33.0
NK_3
32.6
NK_4
32.3
NK_5
32.0
NK_6
31.5
NK_7
31.1
NK_8
31.1
NK_9
31.0
NK_10
30.9
NK_11
30.4
NK_12
30.4
NK_13
30.3
NK_14
29.7
NK_15
29.6
NK_16
29.4
NK_17
29.3
NK_18
29.3
NK_19
29.2
NK_20
29.2
NK_21
29.2
NK_22
29.1
NK_23
28.9
NK_24
28.9
NK_25
28.7
NK_26
28.7
NK_27
28.6
NK_28
28.6
NK_29
28.6
NK_30
28.6
NK_31
28.4
NK_32
28.2
NK_33
28.0
NK_34
28.0
NK_35
27.9
NK_36
27.8
NK_37
27.8
NK_38
27.5
NK_39
27.5
NK_40
27.4
NK_41
27.3
NK_42
27.2
NK_43
27.1
NK_44
27.0
NK_45
27.0
NK_46
27.0
NK_47
26.9
NK_48
26.5
NK_49
26.4
NK_50
26.4
NK_51
26.2
NK_52
26.2
NK_53
26.1
NK_54
26.1
NK_55
25.9
NK_56
25.9
NK_57
25.8
NK_58
25.8
NK_59
25.8
NK_60
25.5
NK_61
25.5
NK_62
25.4
NK_63
25.3
NK_64
25.2
NK_65
25.0
NK_66
24.8
NK_67
24.6
NK_68
24.5
NK_69
24.5
NK_70
24.4
NK_71
24.4
NK_72
24.4
NK_73
24.2
NK_74
23.7
NK_75
23.7
NK_76
23.7
NK_77
23.6
NK_78
23.5
NK_79
23.3
NK_80
23.3
NK_81
23.2
NK_82
22.5
NK_83
22.2
NK_84
22.1
NK_85
21.4
NK_86
21.4
NK_87
20.9
NK_88
20.4
NK_89
20.3
NK_90
20.2
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