A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.5
nTPM
Monaco:
35.7
nTPM
Schmiedel:
32.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
HPA sample
nTPM
Classical monocyte nTPM: 9.5
Samples: 6
Max nTPM: 12.0
Min nTPM: 5.8
P10809_1003
8.0
P10809_1020
11.9
P10809_1039
12.0
P10809_1058
9.5
P10809_1080
5.8
P10809_1107
10.1
Intermediate monocyte nTPM: 8.0
Samples: 6
Max nTPM: 9.3
Min nTPM: 5.9
P10809_1004
6.8
P10809_1023
9.3
P10809_1042
8.2
P10809_1061
8.3
P10809_1081
5.9
P10809_1108
9.3
Non-classical monocyte nTPM: 6.4
Samples: 5
Max nTPM: 8.8
Min nTPM: 1.6
P10809_1005
7.6
P10809_1053
8.8
P10809_1072
1.6
P10809_1082
5.4
P10809_1109
8.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.7
Monaco sample
nTPM
Classical monocyte nTPM: 35.7
Samples: 4
Max nTPM: 44.1
Min nTPM: 29.8
RHH5313_R3680
35.3
RHH5221_R3593
44.1
RHH5250_R3622
29.8
RHH5279_R3651
33.6
Intermediate monocyte nTPM: 22.9
Samples: 4
Max nTPM: 30.9
Min nTPM: 14.4
RHH5314_R3681
20.5
RHH5222_R3594
30.9
RHH5251_R3623
14.4
RHH5280_R3652
25.9
Non-classical monocyte nTPM: 25.3
Samples: 4
Max nTPM: 26.9
Min nTPM: 22.7
RHH5315_R3682
22.7
RHH5223_R3595
26.9
RHH5252_R3624
25.4
RHH5281_R3653
26.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
Schmiedel sample id
TPM
Classical monocyte TPM: 32.3
Samples: 91
Max TPM: 45.2
Min TPM: 19.3
MONOCYTES_1
45.2
MONOCYTES_2
45.2
MONOCYTES_3
44.9
MONOCYTES_4
44.5
MONOCYTES_5
44.3
MONOCYTES_6
44.2
MONOCYTES_7
44.1
MONOCYTES_8
43.7
MONOCYTES_9
42.1
MONOCYTES_10
41.7
MONOCYTES_11
41.5
MONOCYTES_12
41.3
MONOCYTES_13
41.0
MONOCYTES_14
40.9
MONOCYTES_15
39.1
MONOCYTES_16
38.2
MONOCYTES_17
38.2
MONOCYTES_18
38.0
MONOCYTES_19
37.3
MONOCYTES_20
37.3
MONOCYTES_21
36.5
MONOCYTES_22
35.9
MONOCYTES_23
35.5
MONOCYTES_24
35.5
MONOCYTES_25
35.3
MONOCYTES_26
34.9
MONOCYTES_27
34.9
MONOCYTES_28
34.6
MONOCYTES_29
34.4
MONOCYTES_30
34.4
MONOCYTES_31
34.2
MONOCYTES_32
33.7
MONOCYTES_33
33.5
MONOCYTES_34
33.4
MONOCYTES_35
33.1
MONOCYTES_36
33.0
MONOCYTES_37
32.8
MONOCYTES_38
32.7
MONOCYTES_39
32.7
MONOCYTES_40
32.6
MONOCYTES_41
32.5
MONOCYTES_42
32.4
MONOCYTES_43
32.2
MONOCYTES_44
32.1
MONOCYTES_45
32.0
MONOCYTES_46
31.9
MONOCYTES_47
31.7
MONOCYTES_48
31.7
MONOCYTES_49
31.6
MONOCYTES_50
31.5
MONOCYTES_51
31.2
MONOCYTES_52
31.2
MONOCYTES_53
31.0
MONOCYTES_54
30.7
MONOCYTES_55
30.2
MONOCYTES_56
30.1
MONOCYTES_57
30.1
MONOCYTES_58
30.0
MONOCYTES_59
29.6
MONOCYTES_60
29.6
MONOCYTES_61
29.6
MONOCYTES_62
29.5
MONOCYTES_63
29.5
MONOCYTES_64
29.4
MONOCYTES_65
29.1
MONOCYTES_66
28.7
MONOCYTES_67
28.4
MONOCYTES_68
28.3
MONOCYTES_69
27.7
MONOCYTES_70
27.6
MONOCYTES_71
27.2
MONOCYTES_72
27.1
MONOCYTES_73
26.6
MONOCYTES_74
26.4
MONOCYTES_75
26.3
MONOCYTES_76
26.2
MONOCYTES_77
26.0
MONOCYTES_78
25.8
MONOCYTES_79
25.6
MONOCYTES_80
25.6
MONOCYTES_81
25.5
MONOCYTES_82
25.2
MONOCYTES_83
25.0
MONOCYTES_84
25.0
MONOCYTES_85
24.9
MONOCYTES_86
22.9
MONOCYTES_87
22.5
MONOCYTES_88
21.3
MONOCYTES_89
21.1
MONOCYTES_90
20.8
MONOCYTES_91
19.3
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Non-classical monocyte TPM: 31.9
Samples: 90
Max TPM: 43.2
Min TPM: 23.3
M2_1
43.2
M2_2
41.8
M2_3
39.5
M2_4
39.5
M2_5
38.9
M2_6
38.4
M2_7
37.8
M2_8
37.4
M2_9
37.0
M2_10
36.9
M2_11
36.8
M2_12
36.7
M2_13
36.7
M2_14
36.4
M2_15
35.7
M2_16
35.5
M2_17
35.4
M2_18
35.4
M2_19
35.3
M2_20
34.9
M2_21
34.7
M2_22
34.6
M2_23
34.4
M2_24
34.2
M2_25
34.1
M2_26
33.9
M2_27
33.8
M2_28
33.6
M2_29
33.3
M2_30
33.3
M2_31
33.1
M2_32
33.1
M2_33
33.1
M2_34
33.0
M2_35
32.8
M2_36
32.7
M2_37
32.7
M2_38
32.6
M2_39
32.3
M2_40
32.2
M2_41
32.1
M2_42
31.9
M2_43
31.9
M2_44
31.8
M2_45
31.4
M2_46
31.1
M2_47
30.9
M2_48
30.8
M2_49
30.8
M2_50
30.7
M2_51
30.6
M2_52
30.5
M2_53
30.4
M2_54
30.3
M2_55
30.3
M2_56
30.3
M2_57
30.0
M2_58
30.0
M2_59
29.8
M2_60
29.7
M2_61
29.6
M2_62
29.5
M2_63
29.5
M2_64
29.4
M2_65
29.3
M2_66
29.3
M2_67
29.1
M2_68
28.9
M2_69
28.9
M2_70
28.9
M2_71
28.7
M2_72
28.7
M2_73
28.7
M2_74
28.6
M2_75
28.6
M2_76
28.6
M2_77
28.5
M2_78
28.4
M2_79
28.0
M2_80
27.8
M2_81
27.6
M2_82
27.6
M2_83
27.5
M2_84
26.8
M2_85
26.2
M2_86
26.2
M2_87
26.0
M2_88
24.7
M2_89
24.2
M2_90
23.3
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