MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:51.9 nTPM
GTEx:20.2 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:11.7 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.6
2586 Male, age 75, left hemisphere 62.9
2828 Female, age 72, unknown 48.0
2666 Male, age 74, left hemisphere 46.5
1827 Male, age 72, unknown 45.0
2019 Male, age 18, unknown 45.0
1830 Male, age 51, unknown 42.0
1833 Male, age 53, unknown 40.3
1870 Female, age 42, unknown 39.6
2411 Female, age 72, unknown 38.7
2219 Male, age 76, both hemispheres 37.7
Dorsal raphe nucleus
nTPM: 42.2
2298 Female, age 72, unknown 45.6
2047 Male, age 72, unknown 42.9
2016 Female, age 72, unknown 42.5
1828 Male, age 53, unknown 42.4
2750 Male, age 76, both hemispheres 37.8
Inferior colliculus
nTPM: 40.1
2849 Male, age 72, unknown 44.2
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 39.7
2097 Female, age 72, unknown 36.4
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Periaquaductal grey, anterior
nTPM: 45.7
1795 Male, age 51, unknown 51.8
1947 Male, age 18, unknown 44.7
2502 Female, age 75, unknown 40.6
Periaquaductal grey, dorsal
nTPM: 44.6
2850 Male, age 76, both hemispheres 50.6
1831 Male, age 72, unknown 44.4
1840 Male, age 53, unknown 43.6
2464 Female, age 72, unknown 39.8
Periaquaductal grey, lateral
nTPM: 51.9
2272 Male, age 74, both hemispheres 54.7
2140 Male, age 76, both hemispheres 53.5
2053 Male, age 18, unknown 47.5
Pretectal area
nTPM: 45.9
2407 Male, age 75, both hemispheres 51.3
2273 Male, age 74, both hemispheres 48.9
1816 Male, age 51, unknown 48.8
2007 Male, age 72, unknown 48.4
1944 Female, age 72, unknown 47.3
1815 Male, age 53, unknown 44.7
2316 Male, age 76, right hemisphere 43.8
2825 Male, age 18, unknown 43.8
2667 Female, age 75, unknown 43.4
1817 Female, age 42, unknown 43.2
2224 Female, age 72, unknown 41.6
Red nucleus
nTPM: 42.2
2584 Male, age 75, left hemisphere 48.9
2725 Female, age 75, unknown 48.6
2785 Male, age 18, unknown 46.4
2588 Male, age 74, left hemisphere 43.0
2769 Male, age 72, unknown 42.5
1865 Male, age 51, unknown 42.2
1904 Male, age 53, unknown 41.9
2823 Male, age 76, right hemisphere 41.6
2227 Male, age 72, unknown 39.6
2503 Female, age 72, unknown 38.8
1954 Female, age 42, unknown 38.7
1821 Female, age 72, unknown 34.2
Substantia nigra
nTPM: 41.9
2583 Male, age 75, right hemisphere 49.3
2665 Male, age 74, both hemispheres 47.6
2590 Female, age 75, unknown 46.4
1941 Male, age 53, unknown 45.4
2699 Male, age 18, unknown 42.4
1916 Female, age 42, unknown 41.1
1851 Male, age 51, unknown 39.5
1889 Female, age 72, unknown 38.1
2409 Female, age 72, unknown 35.2
2241 Male, age 72, unknown 34.4
Superior colliculus
nTPM: 43.7
2664 Male, age 75, both hemispheres 60.0
2087 Female, age 72, unknown 45.9
1796 Male, age 53, unknown 45.7
1995 Male, age 72, unknown 45.3
1913 Female, age 42, unknown 44.0
2261 Male, age 18, unknown 43.8
2587 Male, age 74, left hemisphere 40.6
2668 Female, age 75, unknown 39.7
1839 Male, age 51, unknown 37.1
1895 Male, age 76, right hemisphere 34.6
Ventral tegmental area
nTPM: 40.8
2223 Female, age 72, unknown 45.6
1942 Male, age 51, unknown 43.0
2021 Male, age 53, unknown 40.2
1915 Female, age 42, unknown 39.9
2218 Male, age 76, both hemispheres 39.5
2410 Female, age 72, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 183

Max nTPM: 39.2
Min nTPM: 10.3
Std nTPM: 4.3
Median nTPM: 19.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 39.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 32.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 31.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 31.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 31.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 28.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 28.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 27.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 27.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 23.7
Min nTPM: 21.1
Sample A Female 21.2
Sample B Female 23.3
Sample C Male 23.7
Sample D Male 21.1
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 20.0
Sample A Female 26.1
Sample B Female 20.0
Sample C Male 30.3
Sample D Male 27.4
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 27.8
Min nTPM: 20.7
Sample B Female 20.7
Sample C Male 27.8
Sample D Male 20.8
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 26.2
Min nTPM: 24.7
Sample A Female 25.3
Sample B Female 26.2
Sample C Male 24.7
Sample D Male 25.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.2
Sample A Male 11.5
Sample B Male 10.2
Sample C Female 12.8
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68861988 Antisense, RP_050301_01_C07, Mouse strain C57BL/6J (56 days, male) 1.6

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