A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
79.7
nTPM
Monaco:
249.8
nTPM
Schmiedel:
306.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.7
HPA sample
nTPM
Memory B-cell nTPM: 38.4
Samples: 6
Max nTPM: 49.3
Min nTPM: 35.0
P10809_1017
35.3
P10809_1025
36.7
P10809_1044
35.4
P10809_1063
35.0
P10809_1092
38.6
P10809_1105
49.3
Naive B-cell nTPM: 79.7
Samples: 6
Max nTPM: 112.1
Min nTPM: 18.1
P10809_1011
79.1
P10809_1029
97.8
P10809_1048
18.1
P10809_1067
70.0
P10809_1091
100.9
P10809_1104
112.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 115.9
Samples: 4
Max nTPM: 147.3
Min nTPM: 92.2
RHH5310_R3677
147.3
RHH5218_R3590
93.4
RHH5247_R3619
130.5
RHH5276_R3648
92.2
Naive B-cell nTPM: 249.8
Samples: 4
Max nTPM: 257.6
Min nTPM: 241.3
RHH5308_R3675
257.6
RHH5216_R3588
241.3
RHH5245_R3617
247.8
RHH5274_R3646
252.6
Non-switched memory B-cell nTPM: 157.3
Samples: 4
Max nTPM: 223.3
Min nTPM: 124.5
RHH5309_R3676
124.6
RHH5217_R3589
156.9
RHH5246_R3618
223.3
RHH5275_R3647
124.5
Plasmablast nTPM: 11.8
Samples: 4
Max nTPM: 16.3
Min nTPM: 7.6
RHH5312_R3679
16.3
RHH5220_R3592
7.6
RHH5249_R3621
15.6
RHH5278_R3650
7.6
Switched memory B-cell nTPM: 130.4
Samples: 4
Max nTPM: 144.8
Min nTPM: 106.0
RHH5311_R3678
139.5
RHH5219_R3591
131.3
RHH5248_R3620
144.8
RHH5277_R3649
106.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.4
Schmiedel sample id
TPM
Naive B-cell TPM: 306.4
Samples: 91
Max TPM: 581.6
Min TPM: 133.5
B_CELL_NAIVE_1
581.6
B_CELL_NAIVE_2
520.0
B_CELL_NAIVE_3
511.7
B_CELL_NAIVE_4
474.6
B_CELL_NAIVE_5
471.2
B_CELL_NAIVE_6
419.4
B_CELL_NAIVE_7
412.3
B_CELL_NAIVE_8
404.7
B_CELL_NAIVE_9
398.4
B_CELL_NAIVE_10
392.0
B_CELL_NAIVE_11
390.0
B_CELL_NAIVE_12
388.3
B_CELL_NAIVE_13
383.9
B_CELL_NAIVE_14
379.6
B_CELL_NAIVE_15
378.6
B_CELL_NAIVE_16
368.8
B_CELL_NAIVE_17
367.4
B_CELL_NAIVE_18
362.4
B_CELL_NAIVE_19
349.6
B_CELL_NAIVE_20
344.1
B_CELL_NAIVE_21
343.9
B_CELL_NAIVE_22
341.2
B_CELL_NAIVE_23
341.0
B_CELL_NAIVE_24
340.7
B_CELL_NAIVE_25
340.2
B_CELL_NAIVE_26
338.9
B_CELL_NAIVE_27
334.4
B_CELL_NAIVE_28
333.6
B_CELL_NAIVE_29
331.9
B_CELL_NAIVE_30
331.8
B_CELL_NAIVE_31
330.1
B_CELL_NAIVE_32
326.3
B_CELL_NAIVE_33
321.2
B_CELL_NAIVE_34
319.7
B_CELL_NAIVE_35
319.7
B_CELL_NAIVE_36
318.2
B_CELL_NAIVE_37
317.9
B_CELL_NAIVE_38
315.9
B_CELL_NAIVE_39
314.9
B_CELL_NAIVE_40
314.7
B_CELL_NAIVE_41
313.0
B_CELL_NAIVE_42
311.2
B_CELL_NAIVE_43
311.1
B_CELL_NAIVE_44
310.9
B_CELL_NAIVE_45
309.3
B_CELL_NAIVE_46
308.4
B_CELL_NAIVE_47
302.9
B_CELL_NAIVE_48
299.0
B_CELL_NAIVE_49
298.7
B_CELL_NAIVE_50
293.9
B_CELL_NAIVE_51
293.6
B_CELL_NAIVE_52
291.7
B_CELL_NAIVE_53
290.3
B_CELL_NAIVE_54
289.2
B_CELL_NAIVE_55
286.6
B_CELL_NAIVE_56
284.5
B_CELL_NAIVE_57
282.2
B_CELL_NAIVE_58
281.6
B_CELL_NAIVE_59
279.3
B_CELL_NAIVE_60
277.6
B_CELL_NAIVE_61
276.9
B_CELL_NAIVE_62
275.9
B_CELL_NAIVE_63
271.1
B_CELL_NAIVE_64
267.3
B_CELL_NAIVE_65
263.4
B_CELL_NAIVE_66
259.4
B_CELL_NAIVE_67
254.6
B_CELL_NAIVE_68
254.1
B_CELL_NAIVE_69
253.9
B_CELL_NAIVE_70
253.9
B_CELL_NAIVE_71
248.1
B_CELL_NAIVE_72
247.4
B_CELL_NAIVE_73
246.1
B_CELL_NAIVE_74
245.9
B_CELL_NAIVE_75
242.1
B_CELL_NAIVE_76
237.7
B_CELL_NAIVE_77
229.2
B_CELL_NAIVE_78
228.7
B_CELL_NAIVE_79
227.3
B_CELL_NAIVE_80
223.5
B_CELL_NAIVE_81
222.9
B_CELL_NAIVE_82
217.9
B_CELL_NAIVE_83
213.0
B_CELL_NAIVE_84
208.6
B_CELL_NAIVE_85
205.9
B_CELL_NAIVE_86
195.7
B_CELL_NAIVE_87
189.8
B_CELL_NAIVE_88
182.4
B_CELL_NAIVE_89
160.2
B_CELL_NAIVE_90
155.8
B_CELL_NAIVE_91
133.5
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