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BETA
  • SUMMARY

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  • PIK3IP1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:79.7 nTPM
Monaco:249.8 nTPM
Schmiedel:306.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

79.7
HPA sample nTPM
Memory B-cell
nTPM: 38.4
Samples: 6

Max nTPM: 49.3
Min nTPM: 35.0
P10809_1017 35.3
P10809_1025 36.7
P10809_1044 35.4
P10809_1063 35.0
P10809_1092 38.6
P10809_1105 49.3
Naive B-cell
nTPM: 79.7
Samples: 6

Max nTPM: 112.1
Min nTPM: 18.1
P10809_1011 79.1
P10809_1029 97.8
P10809_1048 18.1
P10809_1067 70.0
P10809_1091 100.9
P10809_1104 112.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

249.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 115.9
Samples: 4

Max nTPM: 147.3
Min nTPM: 92.2
RHH5310_R3677 147.3
RHH5218_R3590 93.4
RHH5247_R3619 130.5
RHH5276_R3648 92.2
Naive B-cell
nTPM: 249.8
Samples: 4

Max nTPM: 257.6
Min nTPM: 241.3
RHH5308_R3675 257.6
RHH5216_R3588 241.3
RHH5245_R3617 247.8
RHH5274_R3646 252.6
Non-switched memory B-cell
nTPM: 157.3
Samples: 4

Max nTPM: 223.3
Min nTPM: 124.5
RHH5309_R3676 124.6
RHH5217_R3589 156.9
RHH5246_R3618 223.3
RHH5275_R3647 124.5
Plasmablast
nTPM: 11.8
Samples: 4

Max nTPM: 16.3
Min nTPM: 7.6
RHH5312_R3679 16.3
RHH5220_R3592 7.6
RHH5249_R3621 15.6
RHH5278_R3650 7.6
Switched memory B-cell
nTPM: 130.4
Samples: 4

Max nTPM: 144.8
Min nTPM: 106.0
RHH5311_R3678 139.5
RHH5219_R3591 131.3
RHH5248_R3620 144.8
RHH5277_R3649 106.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

306.4
Schmiedel sample id TPM
Naive B-cell
TPM: 306.4
Samples: 91

Max TPM: 581.6
Min TPM: 133.5
B_CELL_NAIVE_1 581.6
B_CELL_NAIVE_2 520.0
B_CELL_NAIVE_3 511.7
B_CELL_NAIVE_4 474.6
B_CELL_NAIVE_5 471.2
B_CELL_NAIVE_6 419.4
B_CELL_NAIVE_7 412.3
B_CELL_NAIVE_8 404.7
B_CELL_NAIVE_9 398.4
B_CELL_NAIVE_10 392.0
B_CELL_NAIVE_11 390.0
B_CELL_NAIVE_12 388.3
B_CELL_NAIVE_13 383.9
B_CELL_NAIVE_14 379.6
B_CELL_NAIVE_15 378.6
B_CELL_NAIVE_16 368.8
B_CELL_NAIVE_17 367.4
B_CELL_NAIVE_18 362.4
B_CELL_NAIVE_19 349.6
B_CELL_NAIVE_20 344.1
B_CELL_NAIVE_21 343.9
B_CELL_NAIVE_22 341.2
B_CELL_NAIVE_23 341.0
B_CELL_NAIVE_24 340.7
B_CELL_NAIVE_25 340.2
B_CELL_NAIVE_26 338.9
B_CELL_NAIVE_27 334.4
B_CELL_NAIVE_28 333.6
B_CELL_NAIVE_29 331.9
B_CELL_NAIVE_30 331.8
B_CELL_NAIVE_31 330.1
B_CELL_NAIVE_32 326.3
B_CELL_NAIVE_33 321.2
B_CELL_NAIVE_34 319.7
B_CELL_NAIVE_35 319.7
B_CELL_NAIVE_36 318.2
B_CELL_NAIVE_37 317.9
B_CELL_NAIVE_38 315.9
B_CELL_NAIVE_39 314.9
B_CELL_NAIVE_40 314.7
B_CELL_NAIVE_41 313.0
B_CELL_NAIVE_42 311.2
B_CELL_NAIVE_43 311.1
B_CELL_NAIVE_44 310.9
B_CELL_NAIVE_45 309.3
B_CELL_NAIVE_46 308.4
B_CELL_NAIVE_47 302.9
B_CELL_NAIVE_48 299.0
B_CELL_NAIVE_49 298.7
B_CELL_NAIVE_50 293.9
B_CELL_NAIVE_51 293.6
B_CELL_NAIVE_52 291.7
B_CELL_NAIVE_53 290.3
B_CELL_NAIVE_54 289.2
B_CELL_NAIVE_55 286.6
B_CELL_NAIVE_56 284.5
B_CELL_NAIVE_57 282.2
B_CELL_NAIVE_58 281.6
B_CELL_NAIVE_59 279.3
B_CELL_NAIVE_60 277.6
B_CELL_NAIVE_61 276.9
B_CELL_NAIVE_62 275.9
B_CELL_NAIVE_63 271.1
B_CELL_NAIVE_64 267.3
B_CELL_NAIVE_65 263.4
B_CELL_NAIVE_66 259.4
B_CELL_NAIVE_67 254.6
B_CELL_NAIVE_68 254.1
B_CELL_NAIVE_69 253.9
B_CELL_NAIVE_70 253.9
B_CELL_NAIVE_71 248.1
B_CELL_NAIVE_72 247.4
B_CELL_NAIVE_73 246.1
B_CELL_NAIVE_74 245.9
B_CELL_NAIVE_75 242.1
B_CELL_NAIVE_76 237.7
B_CELL_NAIVE_77 229.2
B_CELL_NAIVE_78 228.7
B_CELL_NAIVE_79 227.3
B_CELL_NAIVE_80 223.5
B_CELL_NAIVE_81 222.9
B_CELL_NAIVE_82 217.9
B_CELL_NAIVE_83 213.0
B_CELL_NAIVE_84 208.6
B_CELL_NAIVE_85 205.9
B_CELL_NAIVE_86 195.7
B_CELL_NAIVE_87 189.8
B_CELL_NAIVE_88 182.4
B_CELL_NAIVE_89 160.2
B_CELL_NAIVE_90 155.8
B_CELL_NAIVE_91 133.5
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