A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.4
nTPM
Monaco:
194.7
nTPM
Schmiedel:
97.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.4
HPA sample
nTPM
Classical monocyte nTPM: 18.5
Samples: 6
Max nTPM: 23.3
Min nTPM: 12.8
P10809_1003
23.3
P10809_1020
20.5
P10809_1039
19.5
P10809_1058
12.8
P10809_1080
18.9
P10809_1107
16.0
Intermediate monocyte nTPM: 22.9
Samples: 6
Max nTPM: 32.9
Min nTPM: 12.1
P10809_1004
32.9
P10809_1023
29.5
P10809_1042
22.9
P10809_1061
12.1
P10809_1081
17.6
P10809_1108
22.2
Non-classical monocyte nTPM: 34.4
Samples: 5
Max nTPM: 39.8
Min nTPM: 25.2
P10809_1005
37.3
P10809_1053
39.8
P10809_1072
39.5
P10809_1082
25.2
P10809_1109
30.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
194.7
Monaco sample
nTPM
Classical monocyte nTPM: 79.6
Samples: 4
Max nTPM: 96.1
Min nTPM: 57.7
RHH5313_R3680
89.5
RHH5221_R3593
57.7
RHH5250_R3622
96.1
RHH5279_R3651
75.1
Intermediate monocyte nTPM: 129.6
Samples: 4
Max nTPM: 148.9
Min nTPM: 111.9
RHH5314_R3681
148.9
RHH5222_R3594
114.1
RHH5251_R3623
143.5
RHH5280_R3652
111.9
Non-classical monocyte nTPM: 194.7
Samples: 4
Max nTPM: 217.6
Min nTPM: 160.5
RHH5315_R3682
213.7
RHH5223_R3595
160.5
RHH5252_R3624
186.8
RHH5281_R3653
217.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.1
Schmiedel sample id
TPM
Classical monocyte TPM: 40.4
Samples: 91
Max TPM: 61.4
Min TPM: 25.5
MONOCYTES_1
61.4
MONOCYTES_2
57.6
MONOCYTES_3
56.7
MONOCYTES_4
54.9
MONOCYTES_5
54.4
MONOCYTES_6
54.2
MONOCYTES_7
53.1
MONOCYTES_8
50.7
MONOCYTES_9
50.2
MONOCYTES_10
49.8
MONOCYTES_11
49.5
MONOCYTES_12
49.5
MONOCYTES_13
48.3
MONOCYTES_14
48.2
MONOCYTES_15
48.2
MONOCYTES_16
47.8
MONOCYTES_17
47.7
MONOCYTES_18
47.3
MONOCYTES_19
46.9
MONOCYTES_20
46.7
MONOCYTES_21
46.5
MONOCYTES_22
45.9
MONOCYTES_23
45.6
MONOCYTES_24
45.6
MONOCYTES_25
45.3
MONOCYTES_26
44.8
MONOCYTES_27
44.7
MONOCYTES_28
44.6
MONOCYTES_29
44.4
MONOCYTES_30
44.1
MONOCYTES_31
43.1
MONOCYTES_32
42.8
MONOCYTES_33
42.7
MONOCYTES_34
42.6
MONOCYTES_35
42.3
MONOCYTES_36
42.1
MONOCYTES_37
41.8
MONOCYTES_38
41.5
MONOCYTES_39
41.1
MONOCYTES_40
40.7
MONOCYTES_41
40.6
MONOCYTES_42
40.1
MONOCYTES_43
39.9
MONOCYTES_44
39.8
MONOCYTES_45
39.0
MONOCYTES_46
39.0
MONOCYTES_47
38.9
MONOCYTES_48
38.7
MONOCYTES_49
38.4
MONOCYTES_50
38.3
MONOCYTES_51
38.1
MONOCYTES_52
38.0
MONOCYTES_53
37.8
MONOCYTES_54
37.7
MONOCYTES_55
37.6
MONOCYTES_56
37.4
MONOCYTES_57
37.4
MONOCYTES_58
37.4
MONOCYTES_59
37.1
MONOCYTES_60
37.0
MONOCYTES_61
37.0
MONOCYTES_62
36.8
MONOCYTES_63
36.8
MONOCYTES_64
36.2
MONOCYTES_65
36.1
MONOCYTES_66
35.8
MONOCYTES_67
35.7
MONOCYTES_68
35.6
MONOCYTES_69
35.3
MONOCYTES_70
35.0
MONOCYTES_71
35.0
MONOCYTES_72
34.9
MONOCYTES_73
34.9
MONOCYTES_74
34.3
MONOCYTES_75
34.2
MONOCYTES_76
33.7
MONOCYTES_77
33.2
MONOCYTES_78
33.2
MONOCYTES_79
32.7
MONOCYTES_80
32.3
MONOCYTES_81
32.2
MONOCYTES_82
30.9
MONOCYTES_83
30.7
MONOCYTES_84
30.7
MONOCYTES_85
30.1
MONOCYTES_86
29.4
MONOCYTES_87
28.9
MONOCYTES_88
28.1
MONOCYTES_89
26.0
MONOCYTES_90
25.8
MONOCYTES_91
25.5
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Non-classical monocyte TPM: 97.1
Samples: 90
Max TPM: 149.9
Min TPM: 63.0
M2_1
149.9
M2_2
147.6
M2_3
130.4
M2_4
129.9
M2_5
127.6
M2_6
127.0
M2_7
123.6
M2_8
123.0
M2_9
120.4
M2_10
118.9
M2_11
115.5
M2_12
114.5
M2_13
114.5
M2_14
112.9
M2_15
112.1
M2_16
111.4
M2_17
111.1
M2_18
110.2
M2_19
109.9
M2_20
109.3
M2_21
108.3
M2_22
108.3
M2_23
107.6
M2_24
106.1
M2_25
104.8
M2_26
104.5
M2_27
104.1
M2_28
103.2
M2_29
103.2
M2_30
103.1
M2_31
102.9
M2_32
102.6
M2_33
102.5
M2_34
102.4
M2_35
102.2
M2_36
101.5
M2_37
101.4
M2_38
100.9
M2_39
100.4
M2_40
100.2
M2_41
100.2
M2_42
99.0
M2_43
98.5
M2_44
98.1
M2_45
97.6
M2_46
97.5
M2_47
97.4
M2_48
97.4
M2_49
97.2
M2_50
96.0
M2_51
96.0
M2_52
95.5
M2_53
94.3
M2_54
94.1
M2_55
93.2
M2_56
93.2
M2_57
91.3
M2_58
89.9
M2_59
89.8
M2_60
89.0
M2_61
88.8
M2_62
88.5
M2_63
88.3
M2_64
87.7
M2_65
87.5
M2_66
87.3
M2_67
86.7
M2_68
86.5
M2_69
86.1
M2_70
86.1
M2_71
83.5
M2_72
83.2
M2_73
82.2
M2_74
81.9
M2_75
78.4
M2_76
78.4
M2_77
77.4
M2_78
76.2
M2_79
75.4
M2_80
74.9
M2_81
74.6
M2_82
74.2
M2_83
68.8
M2_84
68.0
M2_85
67.5
M2_86
65.8
M2_87
65.3
M2_88
64.7
M2_89
63.6
M2_90
63.0
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