MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:26.2 nTPM
GTEx:17.2 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:10.5 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
2586 Male, age 75, left hemisphere 27.3
1827 Male, age 72, unknown 22.1
2019 Male, age 18, unknown 20.8
2828 Female, age 72, unknown 20.8
2666 Male, age 74, left hemisphere 19.6
2411 Female, age 72, unknown 19.5
1870 Female, age 42, unknown 18.4
2219 Male, age 76, both hemispheres 17.7
1833 Male, age 53, unknown 17.5
1830 Male, age 51, unknown 15.2
Dorsal raphe nucleus
nTPM: 22.0
2298 Female, age 72, unknown 26.5
2016 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 22.0
1828 Male, age 53, unknown 20.8
2750 Male, age 76, both hemispheres 17.4
Inferior colliculus
nTPM: 20.6
2097 Female, age 72, unknown 23.5
2849 Male, age 72, unknown 20.4
1890 Male, age 53, unknown 20.1
1848 Female, age 42, unknown 18.4
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Periaquaductal grey, anterior
nTPM: 23.9
1795 Male, age 51, unknown 26.3
2502 Female, age 75, unknown 25.2
1947 Male, age 18, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 21.7
2850 Male, age 76, both hemispheres 26.9
1840 Male, age 53, unknown 21.2
2464 Female, age 72, unknown 20.6
1831 Male, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 26.2
2272 Male, age 74, both hemispheres 31.2
2140 Male, age 76, both hemispheres 28.0
2053 Male, age 18, unknown 19.4
Pretectal area
nTPM: 20.7
2273 Male, age 74, both hemispheres 26.7
2007 Male, age 72, unknown 24.1
1816 Male, age 51, unknown 23.2
2224 Female, age 72, unknown 22.6
2825 Male, age 18, unknown 22.6
1817 Female, age 42, unknown 19.8
1944 Female, age 72, unknown 19.4
1815 Male, age 53, unknown 19.2
2667 Female, age 75, unknown 18.7
2407 Male, age 75, both hemispheres 16.3
2316 Male, age 76, right hemisphere 15.7
Red nucleus
nTPM: 19.9
2588 Male, age 74, left hemisphere 23.2
2785 Male, age 18, unknown 22.1
2584 Male, age 75, left hemisphere 21.6
2769 Male, age 72, unknown 21.6
2503 Female, age 72, unknown 21.0
2227 Male, age 72, unknown 19.9
1954 Female, age 42, unknown 19.5
1904 Male, age 53, unknown 18.8
2725 Female, age 75, unknown 18.7
1865 Male, age 51, unknown 18.6
1821 Female, age 72, unknown 17.6
2823 Male, age 76, right hemisphere 16.8
Substantia nigra
nTPM: 17.3
1916 Female, age 42, unknown 19.9
2665 Male, age 74, both hemispheres 19.4
1941 Male, age 53, unknown 19.0
2590 Female, age 75, unknown 18.8
2583 Male, age 75, right hemisphere 18.7
2699 Male, age 18, unknown 17.9
1851 Male, age 51, unknown 17.8
1889 Female, age 72, unknown 15.5
2241 Male, age 72, unknown 14.7
2409 Female, age 72, unknown 11.9
Superior colliculus
nTPM: 18.8
2664 Male, age 75, both hemispheres 23.5
1796 Male, age 53, unknown 21.6
2261 Male, age 18, unknown 21.3
1839 Male, age 51, unknown 19.0
2668 Female, age 75, unknown 18.8
2087 Female, age 72, unknown 18.6
2587 Male, age 74, left hemisphere 18.1
1995 Male, age 72, unknown 17.8
1913 Female, age 42, unknown 15.2
1895 Male, age 76, right hemisphere 14.3
Ventral tegmental area
nTPM: 17.8
2410 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 19.1
1915 Female, age 42, unknown 18.7
1942 Male, age 51, unknown 18.6
2223 Female, age 72, unknown 16.3
2218 Male, age 76, both hemispheres 14.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 29.2
Min nTPM: 9.2
Std nTPM: 3.8
Median nTPM: 16.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 29.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 24.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 23.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 23.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.0
FF:10158-103A5 76 years, female 22.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.0
Sample A Female 14.5
Sample B Female 13.0
Sample C Male 14.0
Sample D Male 14.1
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.0
Sample A Female 14.5
Sample B Female 14.1
Sample C Male 14.0
Sample D Male 17.7
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 16.8
Min nTPM: 14.2
Sample B Female 14.2
Sample C Male 16.8
Sample D Male 14.5
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.4
Sample A Female 17.3
Sample B Female 15.4
Sample C Male 12.4
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.0
Sample A Male 11.6
Sample B Male 9.0
Sample C Female 10.8
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
1677 Antisense, RP_040526_01_F06, Mouse strain C57BL/6J (56 days, male) 5.9
1678 Antisense, RP_040526_01_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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