A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.3
nTPM
Monaco:
95.3
nTPM
Schmiedel:
92.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
HPA sample
nTPM
Memory B-cell nTPM: 26.3
Samples: 6
Max nTPM: 37.7
Min nTPM: 8.4
P10809_1017
29.1
P10809_1025
37.7
P10809_1044
8.4
P10809_1063
23.1
P10809_1092
31.9
P10809_1105
27.6
Naive B-cell nTPM: 25.2
Samples: 6
Max nTPM: 33.0
Min nTPM: 13.5
P10809_1011
27.7
P10809_1029
33.0
P10809_1048
13.5
P10809_1067
22.0
P10809_1091
26.9
P10809_1104
27.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 82.7
Samples: 4
Max nTPM: 97.6
Min nTPM: 57.4
RHH5310_R3677
97.6
RHH5218_R3590
57.4
RHH5247_R3619
89.7
RHH5276_R3648
86.1
Naive B-cell nTPM: 95.3
Samples: 4
Max nTPM: 107.4
Min nTPM: 81.5
RHH5308_R3675
86.8
RHH5216_R3588
81.5
RHH5245_R3617
107.4
RHH5274_R3646
105.6
Non-switched memory B-cell nTPM: 79.7
Samples: 4
Max nTPM: 91.7
Min nTPM: 68.3
RHH5309_R3676
86.1
RHH5217_R3589
72.7
RHH5246_R3618
68.3
RHH5275_R3647
91.7
Plasmablast nTPM: 72.0
Samples: 4
Max nTPM: 84.2
Min nTPM: 56.3
RHH5312_R3679
83.2
RHH5220_R3592
64.3
RHH5249_R3621
56.3
RHH5278_R3650
84.2
Switched memory B-cell nTPM: 93.6
Samples: 4
Max nTPM: 110.3
Min nTPM: 78.3
RHH5311_R3678
101.5
RHH5219_R3591
78.3
RHH5248_R3620
84.4
RHH5277_R3649
110.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.2
Schmiedel sample id
TPM
Naive B-cell TPM: 92.2
Samples: 91
Max TPM: 142.4
Min TPM: 47.3
B_CELL_NAIVE_1
142.4
B_CELL_NAIVE_2
123.1
B_CELL_NAIVE_3
117.9
B_CELL_NAIVE_4
117.3
B_CELL_NAIVE_5
114.2
B_CELL_NAIVE_6
113.5
B_CELL_NAIVE_7
112.0
B_CELL_NAIVE_8
110.0
B_CELL_NAIVE_9
110.0
B_CELL_NAIVE_10
108.8
B_CELL_NAIVE_11
107.5
B_CELL_NAIVE_12
107.5
B_CELL_NAIVE_13
106.6
B_CELL_NAIVE_14
105.9
B_CELL_NAIVE_15
105.2
B_CELL_NAIVE_16
105.0
B_CELL_NAIVE_17
104.1
B_CELL_NAIVE_18
103.5
B_CELL_NAIVE_19
103.0
B_CELL_NAIVE_20
102.2
B_CELL_NAIVE_21
101.7
B_CELL_NAIVE_22
101.6
B_CELL_NAIVE_23
101.5
B_CELL_NAIVE_24
101.2
B_CELL_NAIVE_25
99.9
B_CELL_NAIVE_26
99.6
B_CELL_NAIVE_27
99.5
B_CELL_NAIVE_28
99.4
B_CELL_NAIVE_29
99.3
B_CELL_NAIVE_30
98.9
B_CELL_NAIVE_31
98.4
B_CELL_NAIVE_32
98.3
B_CELL_NAIVE_33
98.1
B_CELL_NAIVE_34
98.0
B_CELL_NAIVE_35
97.8
B_CELL_NAIVE_36
97.7
B_CELL_NAIVE_37
97.5
B_CELL_NAIVE_38
97.1
B_CELL_NAIVE_39
97.0
B_CELL_NAIVE_40
96.5
B_CELL_NAIVE_41
96.3
B_CELL_NAIVE_42
96.2
B_CELL_NAIVE_43
96.0
B_CELL_NAIVE_44
96.0
B_CELL_NAIVE_45
96.0
B_CELL_NAIVE_46
95.5
B_CELL_NAIVE_47
94.6
B_CELL_NAIVE_48
94.4
B_CELL_NAIVE_49
94.0
B_CELL_NAIVE_50
94.0
B_CELL_NAIVE_51
93.7
B_CELL_NAIVE_52
93.7
B_CELL_NAIVE_53
93.5
B_CELL_NAIVE_54
93.5
B_CELL_NAIVE_55
92.7
B_CELL_NAIVE_56
92.0
B_CELL_NAIVE_57
91.9
B_CELL_NAIVE_58
91.7
B_CELL_NAIVE_59
91.5
B_CELL_NAIVE_60
91.0
B_CELL_NAIVE_61
91.0
B_CELL_NAIVE_62
90.9
B_CELL_NAIVE_63
89.8
B_CELL_NAIVE_64
89.3
B_CELL_NAIVE_65
85.7
B_CELL_NAIVE_66
85.7
B_CELL_NAIVE_67
84.6
B_CELL_NAIVE_68
84.4
B_CELL_NAIVE_69
84.3
B_CELL_NAIVE_70
82.9
B_CELL_NAIVE_71
82.5
B_CELL_NAIVE_72
82.4
B_CELL_NAIVE_73
82.3
B_CELL_NAIVE_74
80.6
B_CELL_NAIVE_75
79.8
B_CELL_NAIVE_76
79.8
B_CELL_NAIVE_77
79.0
B_CELL_NAIVE_78
78.9
B_CELL_NAIVE_79
76.5
B_CELL_NAIVE_80
72.6
B_CELL_NAIVE_81
70.2
B_CELL_NAIVE_82
66.0
B_CELL_NAIVE_83
65.4
B_CELL_NAIVE_84
64.4
B_CELL_NAIVE_85
64.2
B_CELL_NAIVE_86
55.8
B_CELL_NAIVE_87
55.5
B_CELL_NAIVE_88
53.9
B_CELL_NAIVE_89
52.5
B_CELL_NAIVE_90
51.8
B_CELL_NAIVE_91
47.3
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