A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.0
nTPM
Monaco:
132.0
nTPM
Schmiedel:
113.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
HPA sample
nTPM
Classical monocyte nTPM: 35.0
Samples: 6
Max nTPM: 48.2
Min nTPM: 27.2
P10809_1003
48.2
P10809_1020
40.0
P10809_1039
27.2
P10809_1058
27.5
P10809_1080
33.3
P10809_1107
34.0
Intermediate monocyte nTPM: 33.7
Samples: 6
Max nTPM: 43.3
Min nTPM: 22.5
P10809_1004
38.3
P10809_1023
43.3
P10809_1042
37.7
P10809_1061
22.5
P10809_1081
25.8
P10809_1108
34.5
Non-classical monocyte nTPM: 30.2
Samples: 5
Max nTPM: 42.0
Min nTPM: 19.4
P10809_1005
42.0
P10809_1053
32.2
P10809_1072
29.1
P10809_1082
19.4
P10809_1109
28.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.0
Monaco sample
nTPM
Classical monocyte nTPM: 132.1
Samples: 4
Max nTPM: 145.6
Min nTPM: 116.3
RHH5313_R3680
136.1
RHH5221_R3593
145.6
RHH5250_R3622
116.3
RHH5279_R3651
130.2
Intermediate monocyte nTPM: 101.1
Samples: 4
Max nTPM: 134.3
Min nTPM: 79.2
RHH5314_R3681
91.4
RHH5222_R3594
134.3
RHH5251_R3623
79.2
RHH5280_R3652
99.6
Non-classical monocyte nTPM: 114.2
Samples: 4
Max nTPM: 125.1
Min nTPM: 98.3
RHH5315_R3682
116.3
RHH5223_R3595
125.1
RHH5252_R3624
117.1
RHH5281_R3653
98.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.8
Schmiedel sample id
TPM
Classical monocyte TPM: 113.8
Samples: 91
Max TPM: 148.4
Min TPM: 84.0
MONOCYTES_1
148.4
MONOCYTES_2
144.0
MONOCYTES_3
140.2
MONOCYTES_4
139.5
MONOCYTES_5
138.3
MONOCYTES_6
135.7
MONOCYTES_7
134.4
MONOCYTES_8
134.2
MONOCYTES_9
134.0
MONOCYTES_10
133.5
MONOCYTES_11
133.1
MONOCYTES_12
131.0
MONOCYTES_13
128.2
MONOCYTES_14
127.7
MONOCYTES_15
127.6
MONOCYTES_16
126.6
MONOCYTES_17
124.3
MONOCYTES_18
123.8
MONOCYTES_19
122.3
MONOCYTES_20
122.2
MONOCYTES_21
122.2
MONOCYTES_22
122.0
MONOCYTES_23
121.8
MONOCYTES_24
121.0
MONOCYTES_25
120.4
MONOCYTES_26
119.9
MONOCYTES_27
119.7
MONOCYTES_28
118.5
MONOCYTES_29
118.0
MONOCYTES_30
117.7
MONOCYTES_31
117.5
MONOCYTES_32
116.6
MONOCYTES_33
116.1
MONOCYTES_34
116.1
MONOCYTES_35
114.9
MONOCYTES_36
114.8
MONOCYTES_37
114.7
MONOCYTES_38
114.7
MONOCYTES_39
114.3
MONOCYTES_40
113.9
MONOCYTES_41
113.5
MONOCYTES_42
112.8
MONOCYTES_43
112.4
MONOCYTES_44
112.3
MONOCYTES_45
112.1
MONOCYTES_46
112.0
MONOCYTES_47
111.9
MONOCYTES_48
110.9
MONOCYTES_49
110.5
MONOCYTES_50
110.3
MONOCYTES_51
109.8
MONOCYTES_52
109.6
MONOCYTES_53
109.4
MONOCYTES_54
109.3
MONOCYTES_55
109.2
MONOCYTES_56
109.2
MONOCYTES_57
108.9
MONOCYTES_58
108.5
MONOCYTES_59
108.1
MONOCYTES_60
108.0
MONOCYTES_61
107.9
MONOCYTES_62
107.7
MONOCYTES_63
107.5
MONOCYTES_64
107.4
MONOCYTES_65
107.4
MONOCYTES_66
106.8
MONOCYTES_67
106.6
MONOCYTES_68
106.0
MONOCYTES_69
104.7
MONOCYTES_70
104.0
MONOCYTES_71
103.4
MONOCYTES_72
102.6
MONOCYTES_73
102.6
MONOCYTES_74
102.6
MONOCYTES_75
102.3
MONOCYTES_76
102.2
MONOCYTES_77
101.7
MONOCYTES_78
101.6
MONOCYTES_79
101.4
MONOCYTES_80
101.2
MONOCYTES_81
100.3
MONOCYTES_82
99.9
MONOCYTES_83
99.6
MONOCYTES_84
99.4
MONOCYTES_85
98.6
MONOCYTES_86
98.4
MONOCYTES_87
97.0
MONOCYTES_88
95.3
MONOCYTES_89
94.3
MONOCYTES_90
92.2
MONOCYTES_91
84.0
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Non-classical monocyte TPM: 109.8
Samples: 90
Max TPM: 139.1
Min TPM: 67.9
M2_1
139.1
M2_2
137.9
M2_3
133.9
M2_4
133.8
M2_5
129.9
M2_6
129.1
M2_7
128.8
M2_8
127.6
M2_9
126.4
M2_10
126.1
M2_11
125.7
M2_12
124.5
M2_13
124.4
M2_14
123.8
M2_15
123.5
M2_16
122.5
M2_17
122.4
M2_18
122.1
M2_19
121.6
M2_20
121.4
M2_21
121.1
M2_22
120.2
M2_23
119.3
M2_24
119.0
M2_25
118.9
M2_26
118.9
M2_27
118.3
M2_28
117.7
M2_29
117.7
M2_30
117.2
M2_31
117.1
M2_32
116.8
M2_33
116.3
M2_34
115.7
M2_35
115.2
M2_36
115.1
M2_37
114.8
M2_38
114.5
M2_39
114.2
M2_40
114.0
M2_41
113.8
M2_42
113.0
M2_43
112.7
M2_44
111.9
M2_45
111.3
M2_46
111.1
M2_47
111.1
M2_48
110.9
M2_49
110.8
M2_50
110.8
M2_51
110.5
M2_52
110.0
M2_53
109.3
M2_54
109.2
M2_55
108.1
M2_56
107.6
M2_57
106.9
M2_58
106.9
M2_59
106.9
M2_60
105.7
M2_61
105.0
M2_62
104.7
M2_63
104.4
M2_64
104.0
M2_65
102.5
M2_66
102.4
M2_67
102.3
M2_68
101.8
M2_69
100.9
M2_70
98.7
M2_71
98.2
M2_72
97.7
M2_73
96.5
M2_74
96.3
M2_75
95.8
M2_76
95.7
M2_77
94.2
M2_78
93.4
M2_79
91.1
M2_80
91.1
M2_81
91.0
M2_82
90.5
M2_83
90.5
M2_84
85.0
M2_85
83.2
M2_86
81.9
M2_87
81.0
M2_88
77.9
M2_89
72.9
M2_90
67.9
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