On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78.0
nTPM
HPA Brain:
134.8
nTPM
GTEx:
78.0
nTPM
FANTOM5:
139.5
Scaled Tags Per Million
Macaque:
126.7
nTPM
Mouse:
66.4
nTPM
Rat:
70.4
nTPM
Pig:
188.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
134.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 104.8
2586
Male, age 75, left hemisphere
144.0
2828
Female, age 72, unknown
132.4
2666
Male, age 74, left hemisphere
118.7
1870
Female, age 42, unknown
113.5
1827
Male, age 72, unknown
111.5
1833
Male, age 53, unknown
98.1
2411
Female, age 72, unknown
91.7
2219
Male, age 76, both hemispheres
88.0
1830
Male, age 51, unknown
82.1
2019
Male, age 18, unknown
68.0
Dorsal raphe nucleus nTPM: 134.8
2047
Male, age 72, unknown
173.2
1828
Male, age 53, unknown
149.0
2016
Female, age 72, unknown
133.6
2298
Female, age 72, unknown
114.7
2750
Male, age 76, both hemispheres
103.6
Inferior colliculus nTPM: 128.8
1848
Female, age 42, unknown
141.4
2849
Male, age 72, unknown
136.5
1890
Male, age 53, unknown
122.4
2097
Female, age 72, unknown
114.7
Median raphe nucleus nTPM: 119.7
2220
Male, age 76, midline
119.7
Periaquaductal grey, anterior nTPM: 132.1
1947
Male, age 18, unknown
133.5
2502
Female, age 75, unknown
132.5
1795
Male, age 51, unknown
130.4
Periaquaductal grey, dorsal nTPM: 131.5
1840
Male, age 53, unknown
157.9
2850
Male, age 76, both hemispheres
139.0
2464
Female, age 72, unknown
124.3
1831
Male, age 72, unknown
105.0
Periaquaductal grey, lateral nTPM: 119.7
2140
Male, age 76, both hemispheres
151.6
2053
Male, age 18, unknown
139.0
2272
Male, age 74, both hemispheres
68.5
Pretectal area nTPM: 108.9
1816
Male, age 51, unknown
134.2
1817
Female, age 42, unknown
129.8
1944
Female, age 72, unknown
129.0
2667
Female, age 75, unknown
128.4
2825
Male, age 18, unknown
125.1
2224
Female, age 72, unknown
122.7
2316
Male, age 76, right hemisphere
111.2
1815
Male, age 53, unknown
100.0
2007
Male, age 72, unknown
86.5
2407
Male, age 75, both hemispheres
65.8
2273
Male, age 74, both hemispheres
65.4
Red nucleus nTPM: 114.3
2823
Male, age 76, right hemisphere
155.6
1954
Female, age 42, unknown
143.1
2769
Male, age 72, unknown
124.5
1821
Female, age 72, unknown
123.9
2588
Male, age 74, left hemisphere
123.1
2227
Male, age 72, unknown
123.0
2503
Female, age 72, unknown
123.0
1904
Male, age 53, unknown
114.1
2725
Female, age 75, unknown
109.9
1865
Male, age 51, unknown
93.7
2584
Male, age 75, left hemisphere
74.9
2785
Male, age 18, unknown
62.4
Substantia nigra nTPM: 126.7
2699
Male, age 18, unknown
196.5
2665
Male, age 74, both hemispheres
147.8
1916
Female, age 42, unknown
146.2
1851
Male, age 51, unknown
126.1
2241
Male, age 72, unknown
124.7
2409
Female, age 72, unknown
124.6
1889
Female, age 72, unknown
113.1
2590
Female, age 75, unknown
104.7
1941
Male, age 53, unknown
92.7
2583
Male, age 75, right hemisphere
90.5
Superior colliculus nTPM: 104.4
2087
Female, age 72, unknown
125.9
2261
Male, age 18, unknown
117.8
1839
Male, age 51, unknown
116.8
1796
Male, age 53, unknown
113.3
1895
Male, age 76, right hemisphere
111.6
2664
Male, age 75, both hemispheres
102.8
2668
Female, age 75, unknown
101.1
2587
Male, age 74, left hemisphere
97.3
1995
Male, age 72, unknown
82.3
1913
Female, age 42, unknown
75.1
Ventral tegmental area nTPM: 108.3
1915
Female, age 42, unknown
126.0
2218
Male, age 76, both hemispheres
118.6
2410
Female, age 72, unknown
117.8
1942
Male, age 51, unknown
108.8
2021
Male, age 53, unknown
106.7
2223
Female, age 72, unknown
71.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 78.0
Samples: 183
Max nTPM: 262.9
Min nTPM: 16.3
Std nTPM: 37.2
Median nTPM: 71.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
262.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
217.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
173.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
171.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
167.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
165.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
164.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
149.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
149.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
146.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
140.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
139.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
138.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
134.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
132.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
128.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
126.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
126.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
125.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
125.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
125.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
123.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
122.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
121.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
117.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
114.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
114.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
114.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
113.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
110.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
108.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
107.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
107.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
107.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
103.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
102.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
101.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
100.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
99.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
98.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
98.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
98.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
97.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
96.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
96.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
96.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
96.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
95.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
95.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
94.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
94.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
93.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
92.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
91.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
90.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
90.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
90.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
88.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
87.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
87.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
87.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
87.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
86.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
85.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
84.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
82.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
82.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
79.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
79.4
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
79.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
79.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
78.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
78.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
77.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
77.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
76.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
75.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
75.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
75.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
75.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
75.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
74.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
74.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
74.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
73.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
73.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
73.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
72.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
72.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
71.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
71.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
71.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
70.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
70.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
69.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
68.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
68.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
67.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
67.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
67.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
67.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
66.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
66.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
65.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
64.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
63.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
63.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
63.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
63.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
63.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
62.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
62.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
62.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
61.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
61.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
61.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
61.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
61.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
60.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
60.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
60.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
60.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
60.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
59.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
59.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
58.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
58.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
57.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
56.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
56.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
54.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
53.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
53.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
53.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
53.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
51.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
51.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
51.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
50.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
50.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
50.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
49.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
49.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
48.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
47.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
47.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
46.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
45.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
45.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
45.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
44.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
43.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
43.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
43.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
43.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
42.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
42.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
42.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
41.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
39.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
38.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
36.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
36.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
36.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
35.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
35.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
35.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
34.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
33.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
33.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
33.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
32.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
31.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
30.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
27.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
20.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
18.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
16.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
16.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 90.0
Samples: 1
Max nTPM: 90.0
Min nTPM: 90.0
Sample A
90.0
Midbrain nTPM: 126.7
Samples: 1
Max nTPM: 126.7
Min nTPM: 126.7
Sample A
126.7
Superior colliculi nTPM: 94.0
Samples: 1
Max nTPM: 94.0
Min nTPM: 94.0
Sample A
94.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
188.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 186.3
Samples: 3
Max nTPM: 265.1
Min nTPM: 141.0
Sample A
Female
152.9
Sample B
Female
265.1
Sample C
Male
141.0
Midbrain nTPM: 119.1
Samples: 3
Max nTPM: 135.9
Min nTPM: 99.0
Sample B
Female
122.3
Sample C
Male
135.9
Sample D
Male
99.0
Periaqueductal gray nTPM: 105.2
Samples: 3
Max nTPM: 116.8
Min nTPM: 92.7
Sample B
Female
106.2
Sample C
Male
116.8
Sample D
Male
92.7
Superior colliculi nTPM: 188.3
Samples: 4
Max nTPM: 307.2
Min nTPM: 123.0
Sample A
Female
190.6
Sample B
Female
307.2
Sample C
Male
123.0
Sample D
Male
132.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 66.5
Samples: 4
Max nTPM: 67.4
Min nTPM: 65.1
Sample A
67.4
Sample B
65.1
Sample C
67.3
Sample D
66.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 70.4
Samples: 4
Max nTPM: 79.7
Min nTPM: 59.0
Sample A
79.7
Sample A
59.0
Sample A
77.2
Sample A
65.5
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The Human Protein Atlas project is funded
