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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1031.8 nTPM
FANTOM5:91.8 Scaled Tags Per Million
Pig:202.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003365Antibody HPA055361
Glial cells Not detectedLow
Neuronal cells HighNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1031.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1031.8
Samples: 300

Max nTPM: 2076.5
Min nTPM: 573.9
Std nTPM: 248.8
Median nTPM: 985.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2076.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1984.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1957.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1810.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1719.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1706.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1664.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1657.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1644.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1606.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1603.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1598.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1584.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1582.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1565.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1540.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1529.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1492.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1489.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1472.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1472.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1461.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1451.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1448.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1443.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1441.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1414.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1384.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1375.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1374.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1372.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1361.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1340.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1312.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1309.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1308.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1301.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1298.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1293.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1278.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1277.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1273.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1268.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1261.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1243.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1242.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1235.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1227.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1220.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1218.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1216.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1216.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1214.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1212.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1212.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1208.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1204.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1203.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1202.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1201.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1200.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1190.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1187.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1183.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1178.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1178.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1176.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1174.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1170.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1164.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1161.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1160.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1160.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1159.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1156.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1149.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1146.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1142.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1141.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1135.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1130.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1121.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1121.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1120.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1117.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1115.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1110.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1109.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1108.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1107.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1107.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1106.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1100.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1099.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1098.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1098.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1097.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1095.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1093.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1085.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1082.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1079.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1076.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1073.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1068.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1063.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1059.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1059.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1059.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1059.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1055.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1054.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1051.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1050.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1049.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1048.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1048.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1046.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1044.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1043.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1037.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1037.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1035.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1034.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1034.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1033.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1030.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1027.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1020.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1020.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1019.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1016.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1015.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1014.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1012.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1012.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1011.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1008.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1007.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1007.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1004.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1003.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1001.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1001.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 994.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 992.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 990.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 989.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 988.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 987.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 984.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 979.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 978.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 977.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 976.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 972.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 971.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 970.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 969.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 967.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 965.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 961.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 959.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 959.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 958.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 958.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 957.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 956.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 955.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 953.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 952.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 950.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 950.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 945.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 944.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 942.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 942.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 938.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 938.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 936.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 934.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 931.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 928.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 927.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 926.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 924.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 918.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 917.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 917.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 916.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 912.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 912.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 910.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 908.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 907.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 906.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 902.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 901.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 901.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 900.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 900.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 899.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 898.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 895.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 893.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 891.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 890.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 888.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 885.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 880.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 880.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 878.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 876.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 876.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 875.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 872.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 870.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 868.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 868.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 866.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 863.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 863.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 862.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 861.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 861.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 861.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 859.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 858.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 856.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 855.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 855.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 855.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 854.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 851.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 849.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 845.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 845.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 843.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 843.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 841.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 841.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 839.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 836.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 836.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 832.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 828.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 828.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 828.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 825.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 825.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 823.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 822.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 822.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 817.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 815.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 812.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 810.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 807.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 805.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 802.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 797.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 796.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 796.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 796.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 790.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 783.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 778.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 778.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 778.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 774.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 773.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 772.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 761.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 761.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 761.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 754.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 751.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 739.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 731.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 731.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 730.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 728.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 727.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 714.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 702.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 702.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 699.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 698.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 695.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 695.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 695.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 672.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 669.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 665.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 655.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 648.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 634.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 614.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 601.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 573.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.8
FF:10164-103B2 76 years, female 91.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.0
Pig sample Sample description nTPM
Caudate
nTPM: 202.0
Samples: 4

Max nTPM: 236.6
Min nTPM: 169.0
Sample A Female 181.5
Sample B Female 236.6
Sample C Male 220.7
Sample D Male 169.0

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