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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:750.8 nTPM
GTEx:750.8 nTPM
FANTOM5:203.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

750.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 750.8
Samples: 105

Max nTPM: 1126.3
Min nTPM: 281.9
Std nTPM: 198.3
Median nTPM:
322_1 76 years, male 1126.3
218_1 71 years, female 1076.4
319_1 81 years, male 1072.4
376_1 75 years, female 1068.6
377_1 82 years, female 1065.4
389_1 86 years, female 1064.1
384_1 83 years, male 1062.0
353_1 82 years, female 1042.9
321_1 62 years, female 1041.6
352_1 62 years, male 1038.6
355_1 70 years, female 1015.3
320_1 89 years, female 1001.1
386_1 76 years, male 997.0
351_1 91 years, male 989.9
452_1 88 years, female 978.0
379_1 60 years, male 966.5
163_1 78 years, male 952.3
349_1 83 years, male 949.3
189_1 76 years, male 939.5
318_1 68 years, male 936.2
354_1 81 years, female 930.1
350_1 84 years, female 925.2
177_1 74 years, male 920.9
394_1 75 years, female 915.1
292_1 71 years, male 908.8
2_1 77 years, female 904.7
17_1 71 years, male 904.3
335_1 73 years, female 903.7
4_1 88 years, female 890.7
6_1 73 years, female 880.1
246_1 77 years, male 878.6
293_1 68 years, female 876.7
243_1 75 years, male 874.6
251_1 78 years, male 867.6
35_1 74 years, female 860.3
404_1 82 years, female 845.4
503_1 68 years, male 845.4
153_1 70 years, female 841.8
406_1 79 years, male 839.9
447_1 81 years, male 836.4
172_1 72 years, female 834.1
356_1 87 years, female 831.8
405_1 91 years, male 827.7
526_1 61 years, male 810.2
348_1 84 years, male 802.4
317_1 60 years, male 797.8
425_1 59 years, female 792.7
173_1 67 years, male 792.5
295_1 61 years, female 790.5
375_1 74 years, female 789.6
137_1 83 years, male 786.4
120_1 70 years, female 786.0
291_1 76 years, male 772.2
18_1 88 years, male 767.2
316_1 62 years, male 765.5
145_1 84 years, male 759.1
126_1 63 years, male 754.5
517_1 88 years, male 750.9
229_1 69 years, female 747.9
518_1 75 years, female 739.2
286_1 68 years, female 730.2
237_1 82 years, male 720.6
115_1 83 years, male 717.8
254_1 77 years, female 712.0
506_1 65 years, male 699.2
468_1 89 years, male 692.5
307_1 66 years, female 689.8
311_1 78 years, male 688.8
139_1 64 years, female 685.8
264_1 73 years, female 679.9
109_1 81 years, female 678.6
265_1 87 years, male 631.0
217_1 76 years, male 624.0
315_1 62 years, female 621.0
99_1 64 years, male 620.9
480_1 63 years, male 620.1
288_1 66 years, female 614.0
266_1 85 years, male 610.5
396_1 62 years, male 587.5
41_1 94 years, female 584.7
495_1 57 years, female 584.3
347_1 72 years, male 578.8
499_1 55 years, female 565.3
324_1 76 years, male 561.3
117_1 61 years, male 547.9
414_1 84 years, female 534.8
42_1 85 years, male 533.6
308_1 70 years, female 526.9
162_1 79 years, female 514.0
81_1 67 years, male 500.2
314_1 67 years, male 497.3
142_1 61 years, female 488.7
9_1 66 years, female 482.6
415_1 77 years, female 471.2
119_1 70 years, female 465.2
32_1 67 years, male 458.4
466_1 57 years, female 452.9
501_1 88 years, male 452.2
89_1 63 years, male 452.0
43_1 64 years, female 425.4
313_1 79 years, female 424.8
491_1 89 years, female 368.5
149_1 88 years, male 365.5
413_1 59 years, female 361.5
490_1 67 years, female 281.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

203.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 203.5
FF:10030-101E3 24-65 years, mixed 203.5

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