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  • TISSUE

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  • RPL3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1720.8 nTPM
HPA:1356.6 nTPM
GTEx:1720.8 nTPM
FANTOM5:168.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003365Antibody HPA055361
Glandular cells MediumMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1356.6
overview
Male, age 65
Small intestine sample 232
nTPM: 1786.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1240.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1203.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1196.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1720.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1720.8
Samples: 207

Max nTPM: 3160.0
Min nTPM: 930.8
Std nTPM: 430.1
Median nTPM: 1672.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3160.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3018.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2970.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2964.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2878.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2744.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2697.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 2661.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2632.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2508.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2504.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2492.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2465.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2464.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2448.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2406.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2368.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2357.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2303.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2301.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2284.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2283.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2269.0
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2242.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2237.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2211.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2190.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2165.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2153.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2151.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2138.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2116.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2083.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2071.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2071.2
GTEX-1192X-2526-SM-59868 50-59 years, male 2052.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2050.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2044.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2031.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2030.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2027.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2023.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2019.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2014.6
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2012.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2009.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1998.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1995.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1986.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1979.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1978.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1970.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1966.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1953.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1953.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1952.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1949.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1937.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 1930.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1929.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1928.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1913.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1912.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1903.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1899.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1893.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1888.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1887.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1866.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1861.5
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1858.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1853.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1850.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1842.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1837.5
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1835.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1831.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1830.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1822.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1817.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1815.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1809.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1801.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1801.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1799.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1793.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1788.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1787.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1774.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1759.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1753.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1753.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1748.4
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1722.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1705.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1700.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1696.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1693.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1689.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1687.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1683.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1681.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1676.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1672.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1668.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1667.6
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1666.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1665.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1664.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1663.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1656.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1648.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1640.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1629.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1628.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1610.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1604.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1602.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1588.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1586.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1574.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1565.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1556.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1543.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1539.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1538.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1533.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1527.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1523.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1521.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1521.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1519.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1516.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1513.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1510.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1508.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1506.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1498.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1497.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1497.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1497.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1486.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1486.8
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1482.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1480.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1477.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1463.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1449.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1430.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1427.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1413.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1407.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1402.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1386.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1385.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1381.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1377.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1373.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1371.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1366.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1363.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1355.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1354.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1354.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1349.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1334.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1319.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1316.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 1315.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1314.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1313.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1311.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1300.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1297.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1297.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1291.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1286.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1282.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1267.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1267.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1249.3
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1241.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1238.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1236.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1212.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1211.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1208.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1202.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1198.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1193.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1171.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1166.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1161.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1154.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1150.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1150.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1121.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1102.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1089.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1083.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1069.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1063.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1056.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1051.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1021.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 986.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 930.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 168.6
FF:10024-101D6 15,40,85 years, mixed 168.6

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