MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:105.2 nTPM
GTEx:46.7 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:1.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.2
2411 Female, age 72, unknown 108.6
2019 Male, age 18, unknown 108.1
1830 Male, age 51, unknown 104.5
1833 Male, age 53, unknown 85.3
2586 Male, age 75, left hemisphere 84.0
1870 Female, age 42, unknown 82.4
2828 Female, age 72, unknown 71.4
2219 Male, age 76, both hemispheres 58.1
2666 Male, age 74, left hemisphere 57.8
1827 Male, age 72, unknown 52.0
Dorsal raphe nucleus
nTPM: 58.7
2750 Male, age 76, both hemispheres 105.5
2016 Female, age 72, unknown 58.9
1828 Male, age 53, unknown 56.9
2047 Male, age 72, unknown 40.8
2298 Female, age 72, unknown 31.3
Inferior colliculus
nTPM: 48.2
1890 Male, age 53, unknown 55.1
1848 Female, age 42, unknown 51.9
2849 Male, age 72, unknown 47.2
2097 Female, age 72, unknown 38.5
Median raphe nucleus
nTPM: 51.1
2220 Male, age 76, midline 51.1
Periaquaductal grey, anterior
nTPM: 50.0
2502 Female, age 75, unknown 61.7
1947 Male, age 18, unknown 46.2
1795 Male, age 51, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 61.1
1831 Male, age 72, unknown 40.6
2850 Male, age 76, both hemispheres 27.8
1840 Male, age 53, unknown 23.9
Periaquaductal grey, lateral
nTPM: 44.2
2272 Male, age 74, both hemispheres 54.4
2053 Male, age 18, unknown 49.0
2140 Male, age 76, both hemispheres 29.3
Pretectal area
nTPM: 51.0
2316 Male, age 76, right hemisphere 72.2
2407 Male, age 75, both hemispheres 68.4
1815 Male, age 53, unknown 63.9
2007 Male, age 72, unknown 55.4
2667 Female, age 75, unknown 55.0
2273 Male, age 74, both hemispheres 50.2
2825 Male, age 18, unknown 50.2
1817 Female, age 42, unknown 44.8
2224 Female, age 72, unknown 42.9
1816 Male, age 51, unknown 29.3
1944 Female, age 72, unknown 29.0
Red nucleus
nTPM: 105.2
2769 Male, age 72, unknown 122.8
2227 Male, age 72, unknown 122.2
1821 Female, age 72, unknown 116.6
1865 Male, age 51, unknown 116.1
2823 Male, age 76, right hemisphere 115.6
1904 Male, age 53, unknown 110.3
2785 Male, age 18, unknown 107.4
2584 Male, age 75, left hemisphere 104.1
2588 Male, age 74, left hemisphere 102.8
2503 Female, age 72, unknown 101.2
1954 Female, age 42, unknown 77.0
2725 Female, age 75, unknown 66.2
Substantia nigra
nTPM: 57.9
2583 Male, age 75, right hemisphere 90.3
1851 Male, age 51, unknown 71.2
2409 Female, age 72, unknown 66.5
2590 Female, age 75, unknown 60.2
1941 Male, age 53, unknown 58.6
1889 Female, age 72, unknown 58.4
2699 Male, age 18, unknown 55.0
1916 Female, age 42, unknown 41.1
2665 Male, age 74, both hemispheres 39.5
2241 Male, age 72, unknown 38.4
Superior colliculus
nTPM: 64.9
1913 Female, age 42, unknown 105.3
1995 Male, age 72, unknown 101.4
1895 Male, age 76, right hemisphere 70.6
1839 Male, age 51, unknown 67.9
2668 Female, age 75, unknown 64.2
2587 Male, age 74, left hemisphere 63.5
1796 Male, age 53, unknown 48.5
2664 Male, age 75, both hemispheres 48.0
2261 Male, age 18, unknown 40.0
2087 Female, age 72, unknown 39.9
Ventral tegmental area
nTPM: 72.4
2223 Female, age 72, unknown 115.9
2410 Female, age 72, unknown 80.1
2021 Male, age 53, unknown 68.6
1942 Male, age 51, unknown 65.0
2218 Male, age 76, both hemispheres 55.7
1915 Female, age 42, unknown 49.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 183

Max nTPM: 269.8
Min nTPM: 7.9
Std nTPM: 32.4
Median nTPM: 39.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 269.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 180.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 144.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 143.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 118.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 107.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 104.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 99.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.4
Sample A Female 4.1
Sample B Female 2.4
Sample C Male 2.8
Sample D Male 3.7
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 7.2
Min nTPM: 1.8
Sample A Female 7.2
Sample B Female 2.7
Sample C Male 2.9
Sample D Male 1.8
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 9.2
Min nTPM: 3.9
Sample B Female 3.9
Sample C Male 9.2
Sample D Male 6.2
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.1
Sample A Female 3.7
Sample B Female 1.1
Sample C Male 2.7
Sample D Male 2.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.3
Sample A Male 2.8
Sample B Male 1.4
Sample C Female 1.3
Sample D Female 1.7

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