MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.3 nTPM
HPA Brain:118.2 nTPM
GTEx:65.3 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:135.3 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.3
1827 Male, age 72, unknown 128.4
2666 Male, age 74, left hemisphere 128.1
2586 Male, age 75, left hemisphere 123.7
2411 Female, age 72, unknown 122.9
2828 Female, age 72, unknown 117.9
1870 Female, age 42, unknown 107.0
1830 Male, age 51, unknown 105.4
1833 Male, age 53, unknown 104.2
2019 Male, age 18, unknown 100.2
2219 Male, age 76, both hemispheres 94.7
Dorsal raphe nucleus
nTPM: 108.9
2047 Male, age 72, unknown 123.6
2298 Female, age 72, unknown 115.0
2750 Male, age 76, both hemispheres 112.7
1828 Male, age 53, unknown 99.3
2016 Female, age 72, unknown 94.0
Inferior colliculus
nTPM: 97.0
2849 Male, age 72, unknown 101.7
1848 Female, age 42, unknown 101.4
2097 Female, age 72, unknown 99.7
1890 Male, age 53, unknown 85.3
Median raphe nucleus
nTPM: 112.5
2220 Male, age 76, midline 112.5
Periaquaductal grey, anterior
nTPM: 116.6
1795 Male, age 51, unknown 122.1
1947 Male, age 18, unknown 119.4
2502 Female, age 75, unknown 108.5
Periaquaductal grey, dorsal
nTPM: 90.8
1840 Male, age 53, unknown 101.6
2464 Female, age 72, unknown 100.1
1831 Male, age 72, unknown 86.9
2850 Male, age 76, both hemispheres 74.4
Periaquaductal grey, lateral
nTPM: 88.8
2053 Male, age 18, unknown 98.7
2140 Male, age 76, both hemispheres 87.4
2272 Male, age 74, both hemispheres 80.2
Pretectal area
nTPM: 101.1
2007 Male, age 72, unknown 116.6
2825 Male, age 18, unknown 113.0
2407 Male, age 75, both hemispheres 110.0
1816 Male, age 51, unknown 105.9
2316 Male, age 76, right hemisphere 103.9
2224 Female, age 72, unknown 103.7
1817 Female, age 42, unknown 99.9
1815 Male, age 53, unknown 97.9
1944 Female, age 72, unknown 96.2
2667 Female, age 75, unknown 91.9
2273 Male, age 74, both hemispheres 73.2
Red nucleus
nTPM: 100.1
2588 Male, age 74, left hemisphere 129.9
2584 Male, age 75, left hemisphere 129.8
2725 Female, age 75, unknown 106.3
2785 Male, age 18, unknown 101.1
2823 Male, age 76, right hemisphere 98.1
2503 Female, age 72, unknown 96.9
2769 Male, age 72, unknown 96.1
2227 Male, age 72, unknown 95.0
1821 Female, age 72, unknown 94.7
1904 Male, age 53, unknown 87.2
1865 Male, age 51, unknown 84.4
1954 Female, age 42, unknown 81.1
Substantia nigra
nTPM: 118.2
1941 Male, age 53, unknown 157.1
1916 Female, age 42, unknown 139.5
1851 Male, age 51, unknown 122.1
2665 Male, age 74, both hemispheres 117.0
2583 Male, age 75, right hemisphere 115.6
2409 Female, age 72, unknown 112.3
2241 Male, age 72, unknown 107.3
1889 Female, age 72, unknown 105.7
2590 Female, age 75, unknown 103.2
2699 Male, age 18, unknown 102.1
Superior colliculus
nTPM: 103.2
2668 Female, age 75, unknown 127.2
1796 Male, age 53, unknown 112.0
2664 Male, age 75, both hemispheres 110.9
1839 Male, age 51, unknown 108.1
1895 Male, age 76, right hemisphere 105.8
2587 Male, age 74, left hemisphere 102.1
2261 Male, age 18, unknown 100.6
2087 Female, age 72, unknown 96.1
1913 Female, age 42, unknown 91.2
1995 Male, age 72, unknown 78.4
Ventral tegmental area
nTPM: 109.1
1915 Female, age 42, unknown 117.4
1942 Male, age 51, unknown 112.5
2410 Female, age 72, unknown 112.0
2218 Male, age 76, both hemispheres 105.4
2223 Female, age 72, unknown 104.8
2021 Male, age 53, unknown 102.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.3
Samples: 183

Max nTPM: 191.5
Min nTPM: 23.7
Std nTPM: 22.5
Median nTPM: 61.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 191.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 140.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 138.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 133.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 120.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 111.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 104.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 102.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 101.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 98.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.6
FF:10158-103A5 76 years, female 100.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.7
Samples: 4

Max nTPM: 43.1
Min nTPM: 16.4
Sample A Female 39.5
Sample B Female 23.9
Sample C Male 43.1
Sample D Male 16.4
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 21.9
Sample A Female 21.9
Sample B Female 24.9
Sample C Male 35.0
Sample D Male 38.2
Periaqueductal gray
nTPM: 34.0
Samples: 3

Max nTPM: 44.4
Min nTPM: 26.4
Sample B Female 26.4
Sample C Male 44.4
Sample D Male 31.3
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 33.6
Min nTPM: 18.6
Sample A Female 33.6
Sample B Female 18.6
Sample C Male 26.9
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 135.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.3
Samples: 4

Max nTPM: 141.6
Min nTPM: 132.3
Sample A Male 132.3
Sample B Male 132.5
Sample C Female 141.6
Sample D Female 134.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
2519 Antisense, RP_040324_01_B02, Mouse strain C57BL/6J (56 days, male) 21.4
2520 Antisense, RP_040324_01_B02, Mouse strain C57BL/6J (56 days, male) 16.8
887 Sense, RPS_Baylor_37031, Mouse strain C57BL/6J (56 days, male) 0.0

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