A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.7
nTPM
Monaco:
76.6
nTPM
Schmiedel:
46.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.7
HPA sample
nTPM
NK-cell nTPM: 39.7
Samples: 6
Max nTPM: 78.8
Min nTPM: 19.4
P10809_1013
25.9
P10809_1033
45.3
P10809_1052
38.8
P10809_1071
19.4
P10809_1093
78.8
P10809_1103
30.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.6
Monaco sample
nTPM
NK-cell nTPM: 76.6
Samples: 4
Max nTPM: 87.8
Min nTPM: 64.5
RHH5316_R3683
71.2
RHH5224_R3596
87.8
RHH5253_R3625
82.9
RHH5282_R3654
64.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.2
Schmiedel sample id
TPM
NK-cell TPM: 46.2
Samples: 90
Max TPM: 73.6
Min TPM: 16.0
NK_1
73.6
NK_2
72.6
NK_3
70.7
NK_4
70.1
NK_5
69.5
NK_6
68.6
NK_7
68.4
NK_8
67.2
NK_9
66.1
NK_10
64.9
NK_11
64.1
NK_12
63.3
NK_13
62.8
NK_14
61.9
NK_15
61.8
NK_16
61.2
NK_17
60.0
NK_18
59.5
NK_19
58.2
NK_20
58.2
NK_21
56.1
NK_22
55.0
NK_23
54.5
NK_24
54.2
NK_25
53.5
NK_26
53.1
NK_27
52.6
NK_28
52.6
NK_29
51.5
NK_30
51.2
NK_31
50.9
NK_32
50.3
NK_33
50.3
NK_34
50.0
NK_35
49.9
NK_36
49.9
NK_37
49.4
NK_38
49.3
NK_39
48.9
NK_40
48.7
NK_41
48.5
NK_42
48.0
NK_43
47.8
NK_44
47.4
NK_45
47.1
NK_46
46.8
NK_47
45.3
NK_48
45.3
NK_49
45.2
NK_50
44.5
NK_51
43.7
NK_52
42.1
NK_53
42.0
NK_54
41.8
NK_55
41.3
NK_56
40.9
NK_57
40.5
NK_58
40.3
NK_59
39.8
NK_60
39.8
NK_61
39.7
NK_62
39.5
NK_63
39.0
NK_64
38.8
NK_65
38.5
NK_66
37.7
NK_67
37.4
NK_68
36.0
NK_69
35.9
NK_70
35.7
NK_71
35.5
NK_72
35.2
NK_73
34.6
NK_74
34.1
NK_75
32.6
NK_76
32.1
NK_77
31.0
NK_78
30.1
NK_79
29.7
NK_80
29.2
NK_81
29.0
NK_82
28.8
NK_83
28.3
NK_84
28.3
NK_85
27.7
NK_86
23.7
NK_87
22.7
NK_88
20.8
NK_89
17.6
NK_90
16.0
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