A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
97.6
nTPM
Monaco:
182.6
nTPM
Schmiedel:
61.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.6
HPA sample
nTPM
Classical monocyte nTPM: 53.0
Samples: 6
Max nTPM: 96.5
Min nTPM: 30.7
P10809_1003
96.5
P10809_1020
51.1
P10809_1039
47.1
P10809_1058
30.7
P10809_1080
51.3
P10809_1107
41.3
Intermediate monocyte nTPM: 76.4
Samples: 6
Max nTPM: 100.0
Min nTPM: 51.1
P10809_1004
100.0
P10809_1023
84.0
P10809_1042
87.6
P10809_1061
83.4
P10809_1081
52.3
P10809_1108
51.1
Non-classical monocyte nTPM: 97.6
Samples: 5
Max nTPM: 169.0
Min nTPM: 44.9
P10809_1005
113.5
P10809_1053
94.7
P10809_1072
169.0
P10809_1082
44.9
P10809_1109
65.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.6
Monaco sample
nTPM
Classical monocyte nTPM: 119.9
Samples: 4
Max nTPM: 147.6
Min nTPM: 88.6
RHH5313_R3680
117.1
RHH5221_R3593
147.6
RHH5250_R3622
126.3
RHH5279_R3651
88.6
Intermediate monocyte nTPM: 155.7
Samples: 4
Max nTPM: 236.9
Min nTPM: 110.2
RHH5314_R3681
141.0
RHH5222_R3594
236.9
RHH5251_R3623
110.2
RHH5280_R3652
134.7
Non-classical monocyte nTPM: 182.6
Samples: 4
Max nTPM: 232.4
Min nTPM: 154.3
RHH5315_R3682
166.7
RHH5223_R3595
232.4
RHH5252_R3624
177.1
RHH5281_R3653
154.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.0
Schmiedel sample id
TPM
Classical monocyte TPM: 40.6
Samples: 91
Max TPM: 55.4
Min TPM: 24.6
MONOCYTES_1
55.4
MONOCYTES_2
52.6
MONOCYTES_3
52.3
MONOCYTES_4
51.1
MONOCYTES_5
50.2
MONOCYTES_6
49.9
MONOCYTES_7
49.2
MONOCYTES_8
49.1
MONOCYTES_9
48.8
MONOCYTES_10
48.8
MONOCYTES_11
48.3
MONOCYTES_12
48.3
MONOCYTES_13
47.4
MONOCYTES_14
47.4
MONOCYTES_15
47.3
MONOCYTES_16
47.2
MONOCYTES_17
47.0
MONOCYTES_18
46.7
MONOCYTES_19
46.5
MONOCYTES_20
46.2
MONOCYTES_21
45.9
MONOCYTES_22
45.8
MONOCYTES_23
45.7
MONOCYTES_24
45.5
MONOCYTES_25
45.2
MONOCYTES_26
45.1
MONOCYTES_27
45.1
MONOCYTES_28
44.7
MONOCYTES_29
44.6
MONOCYTES_30
44.5
MONOCYTES_31
44.2
MONOCYTES_32
44.1
MONOCYTES_33
43.5
MONOCYTES_34
43.4
MONOCYTES_35
43.3
MONOCYTES_36
42.9
MONOCYTES_37
42.6
MONOCYTES_38
42.4
MONOCYTES_39
42.3
MONOCYTES_40
42.2
MONOCYTES_41
41.5
MONOCYTES_42
41.4
MONOCYTES_43
41.3
MONOCYTES_44
41.3
MONOCYTES_45
41.1
MONOCYTES_46
41.1
MONOCYTES_47
41.0
MONOCYTES_48
40.7
MONOCYTES_49
40.5
MONOCYTES_50
40.5
MONOCYTES_51
40.4
MONOCYTES_52
40.2
MONOCYTES_53
39.9
MONOCYTES_54
39.9
MONOCYTES_55
39.6
MONOCYTES_56
39.5
MONOCYTES_57
39.0
MONOCYTES_58
39.0
MONOCYTES_59
38.7
MONOCYTES_60
38.6
MONOCYTES_61
37.6
MONOCYTES_62
37.2
MONOCYTES_63
37.0
MONOCYTES_64
36.8
MONOCYTES_65
36.7
MONOCYTES_66
36.1
MONOCYTES_67
35.8
MONOCYTES_68
35.7
MONOCYTES_69
35.4
MONOCYTES_70
35.3
MONOCYTES_71
35.1
MONOCYTES_72
35.1
MONOCYTES_73
35.0
MONOCYTES_74
35.0
MONOCYTES_75
34.7
MONOCYTES_76
34.5
MONOCYTES_77
34.2
MONOCYTES_78
34.1
MONOCYTES_79
33.9
MONOCYTES_80
33.8
MONOCYTES_81
32.5
MONOCYTES_82
31.1
MONOCYTES_83
30.0
MONOCYTES_84
29.6
MONOCYTES_85
29.4
MONOCYTES_86
28.9
MONOCYTES_87
28.8
MONOCYTES_88
28.4
MONOCYTES_89
28.2
MONOCYTES_90
25.5
MONOCYTES_91
24.6
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Non-classical monocyte TPM: 61.0
Samples: 90
Max TPM: 90.0
Min TPM: 26.2
M2_1
90.0
M2_2
84.7
M2_3
82.5
M2_4
82.3
M2_5
81.4
M2_6
81.1
M2_7
79.1
M2_8
79.0
M2_9
78.6
M2_10
77.5
M2_11
77.5
M2_12
76.6
M2_13
76.4
M2_14
76.2
M2_15
76.1
M2_16
75.9
M2_17
75.6
M2_18
75.2
M2_19
74.0
M2_20
73.7
M2_21
73.4
M2_22
72.8
M2_23
72.4
M2_24
71.7
M2_25
71.5
M2_26
71.4
M2_27
71.1
M2_28
71.1
M2_29
69.8
M2_30
69.8
M2_31
69.8
M2_32
68.9
M2_33
68.6
M2_34
67.5
M2_35
67.3
M2_36
66.9
M2_37
66.7
M2_38
66.5
M2_39
65.8
M2_40
65.2
M2_41
65.1
M2_42
64.7
M2_43
64.4
M2_44
63.9
M2_45
63.9
M2_46
62.4
M2_47
62.3
M2_48
62.1
M2_49
61.2
M2_50
60.2
M2_51
59.5
M2_52
58.7
M2_53
58.7
M2_54
58.3
M2_55
58.1
M2_56
57.9
M2_57
57.8
M2_58
57.8
M2_59
57.7
M2_60
56.3
M2_61
56.1
M2_62
55.7
M2_63
54.4
M2_64
53.3
M2_65
52.3
M2_66
51.5
M2_67
50.6
M2_68
50.4
M2_69
49.7
M2_70
48.7
M2_71
48.1
M2_72
48.0
M2_73
46.6
M2_74
46.6
M2_75
46.2
M2_76
44.4
M2_77
43.6
M2_78
42.7
M2_79
42.6
M2_80
41.9
M2_81
39.1
M2_82
39.0
M2_83
38.8
M2_84
38.3
M2_85
37.3
M2_86
33.1
M2_87
32.7
M2_88
28.3
M2_89
27.8
M2_90
26.2
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