MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.0 nTPM
HPA Brain:34.8 nTPM
GTEx:31.0 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:28.5 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.1
2586 Male, age 75, left hemisphere 47.3
1827 Male, age 72, unknown 29.9
2019 Male, age 18, unknown 29.0
2666 Male, age 74, left hemisphere 27.8
2828 Female, age 72, unknown 26.8
2411 Female, age 72, unknown 25.5
1833 Male, age 53, unknown 24.0
1870 Female, age 42, unknown 22.8
2219 Male, age 76, both hemispheres 19.3
1830 Male, age 51, unknown 19.1
Dorsal raphe nucleus
nTPM: 25.7
2298 Female, age 72, unknown 29.6
2016 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 25.5
2047 Male, age 72, unknown 24.8
2750 Male, age 76, both hemispheres 21.3
Inferior colliculus
nTPM: 24.3
2849 Male, age 72, unknown 25.3
1848 Female, age 42, unknown 24.4
2097 Female, age 72, unknown 24.1
1890 Male, age 53, unknown 23.3
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Periaquaductal grey, anterior
nTPM: 34.8
2502 Female, age 75, unknown 41.5
1795 Male, age 51, unknown 34.7
1947 Male, age 18, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 26.6
1840 Male, age 53, unknown 33.8
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 21.5
Periaquaductal grey, lateral
nTPM: 26.0
2053 Male, age 18, unknown 29.6
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 23.6
Pretectal area
nTPM: 28.1
2007 Male, age 72, unknown 37.3
2407 Male, age 75, both hemispheres 33.1
1816 Male, age 51, unknown 32.9
1817 Female, age 42, unknown 29.2
2667 Female, age 75, unknown 29.2
1944 Female, age 72, unknown 28.8
1815 Male, age 53, unknown 27.3
2273 Male, age 74, both hemispheres 27.3
2224 Female, age 72, unknown 23.4
2825 Male, age 18, unknown 22.1
2316 Male, age 76, right hemisphere 18.9
Red nucleus
nTPM: 24.3
2584 Male, age 75, left hemisphere 32.5
2588 Male, age 74, left hemisphere 28.4
2785 Male, age 18, unknown 27.2
1821 Female, age 72, unknown 26.1
1865 Male, age 51, unknown 25.5
2503 Female, age 72, unknown 25.0
1904 Male, age 53, unknown 24.9
2769 Male, age 72, unknown 24.1
1954 Female, age 42, unknown 21.7
2725 Female, age 75, unknown 21.0
2227 Male, age 72, unknown 19.8
2823 Male, age 76, right hemisphere 15.8
Substantia nigra
nTPM: 31.1
2409 Female, age 72, unknown 37.0
1851 Male, age 51, unknown 36.6
2583 Male, age 75, right hemisphere 33.8
2665 Male, age 74, both hemispheres 32.9
1916 Female, age 42, unknown 31.4
2590 Female, age 75, unknown 29.8
1941 Male, age 53, unknown 29.1
2241 Male, age 72, unknown 28.6
1889 Female, age 72, unknown 28.4
2699 Male, age 18, unknown 23.2
Superior colliculus
nTPM: 28.9
2664 Male, age 75, both hemispheres 46.5
2261 Male, age 18, unknown 39.7
1796 Male, age 53, unknown 27.7
2087 Female, age 72, unknown 27.1
2587 Male, age 74, left hemisphere 26.6
2668 Female, age 75, unknown 25.9
1995 Male, age 72, unknown 25.8
1839 Male, age 51, unknown 23.7
1895 Male, age 76, right hemisphere 23.0
1913 Female, age 42, unknown 22.9
Ventral tegmental area
nTPM: 25.8
1915 Female, age 42, unknown 29.5
1942 Male, age 51, unknown 27.6
2410 Female, age 72, unknown 26.8
2223 Female, age 72, unknown 24.2
2021 Male, age 53, unknown 23.9
2218 Male, age 76, both hemispheres 22.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.0
Samples: 183

Max nTPM: 62.8
Min nTPM: 8.7
Std nTPM: 9.3
Median nTPM: 30.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 62.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 62.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 56.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 53.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 50.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 49.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 48.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 48.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 5.3
Sample C Male 5.1
Sample D Male 6.1
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 5.7
Sample C Male 7.1
Sample D Male 6.4
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 5.9
Min nTPM: 5.5
Sample B Female 5.9
Sample C Male 5.5
Sample D Male 5.9
Superior colliculi
nTPM: 5.4
Samples: 4

Max nTPM: 6.8
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 5.3
Sample C Male 6.8
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 22.8
Sample A Male 32.9
Sample B Male 27.6
Sample C Female 22.8
Sample D Female 30.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
393250 Antisense, RP_040804_02_H09, Mouse strain C57BL/6J (56 days, male) 1.1
81599664 Antisense, RP_071217_04_E06, Mouse strain C57BL/6J (56 days, male) 1.1

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