A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.0
nTPM
Monaco:
144.1
nTPM
Schmiedel:
37.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.0
HPA sample
nTPM
NK-cell nTPM: 60.0
Samples: 6
Max nTPM: 67.1
Min nTPM: 43.3
P10809_1013
43.3
P10809_1033
61.3
P10809_1052
66.7
P10809_1071
58.1
P10809_1093
67.1
P10809_1103
63.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.1
Monaco sample
nTPM
NK-cell nTPM: 144.1
Samples: 4
Max nTPM: 174.0
Min nTPM: 107.7
RHH5316_R3683
107.7
RHH5224_R3596
174.0
RHH5253_R3625
128.8
RHH5282_R3654
166.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.0
Schmiedel sample id
TPM
NK-cell TPM: 36.9
Samples: 90
Max TPM: 45.9
Min TPM: 28.9
NK_1
45.9
NK_2
45.5
NK_3
44.4
NK_4
43.8
NK_5
43.8
NK_6
42.9
NK_7
42.7
NK_8
42.3
NK_9
41.9
NK_10
41.8
NK_11
41.4
NK_12
41.3
NK_13
41.3
NK_14
41.1
NK_15
40.9
NK_16
40.8
NK_17
40.8
NK_18
40.7
NK_19
40.6
NK_20
40.0
NK_21
39.7
NK_22
39.6
NK_23
39.6
NK_24
39.5
NK_25
39.4
NK_26
39.4
NK_27
39.3
NK_28
39.2
NK_29
39.1
NK_30
38.7
NK_31
38.6
NK_32
38.2
NK_33
38.0
NK_34
37.9
NK_35
37.8
NK_36
37.6
NK_37
37.5
NK_38
37.5
NK_39
37.3
NK_40
37.3
NK_41
37.0
NK_42
36.9
NK_43
36.8
NK_44
36.6
NK_45
36.5
NK_46
36.3
NK_47
36.3
NK_48
36.3
NK_49
36.2
NK_50
36.1
NK_51
36.0
NK_52
36.0
NK_53
35.9
NK_54
35.9
NK_55
35.8
NK_56
35.8
NK_57
35.8
NK_58
35.5
NK_59
35.5
NK_60
35.1
NK_61
35.1
NK_62
35.1
NK_63
34.9
NK_64
34.6
NK_65
34.5
NK_66
34.5
NK_67
34.5
NK_68
34.3
NK_69
34.0
NK_70
34.0
NK_71
33.9
NK_72
33.9
NK_73
33.4
NK_74
33.2
NK_75
33.0
NK_76
33.0
NK_77
32.8
NK_78
32.7
NK_79
32.5
NK_80
32.5
NK_81
32.2
NK_82
32.2
NK_83
31.7
NK_84
31.5
NK_85
31.3
NK_86
31.2
NK_87
31.1
NK_88
30.9
NK_89
30.7
NK_90
28.9
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