A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
50.1
nTPM
Monaco:
205.6
nTPM
Schmiedel:
31.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.1
HPA sample
nTPM
Classical monocyte nTPM: 47.9
Samples: 6
Max nTPM: 55.7
Min nTPM: 30.8
P10809_1003
54.3
P10809_1020
49.6
P10809_1039
55.7
P10809_1058
48.8
P10809_1080
48.3
P10809_1107
30.8
Intermediate monocyte nTPM: 37.2
Samples: 6
Max nTPM: 51.7
Min nTPM: 23.6
P10809_1004
51.7
P10809_1023
41.9
P10809_1042
40.8
P10809_1061
32.2
P10809_1081
32.8
P10809_1108
23.6
Non-classical monocyte nTPM: 50.1
Samples: 5
Max nTPM: 101.8
Min nTPM: 22.4
P10809_1005
46.6
P10809_1053
55.2
P10809_1072
101.8
P10809_1082
24.4
P10809_1109
22.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.6
Monaco sample
nTPM
Classical monocyte nTPM: 205.6
Samples: 4
Max nTPM: 236.2
Min nTPM: 186.7
RHH5313_R3680
201.6
RHH5221_R3593
236.2
RHH5250_R3622
198.0
RHH5279_R3651
186.7
Intermediate monocyte nTPM: 139.0
Samples: 4
Max nTPM: 151.2
Min nTPM: 119.7
RHH5314_R3681
119.7
RHH5222_R3594
146.1
RHH5251_R3623
138.9
RHH5280_R3652
151.2
Non-classical monocyte nTPM: 179.7
Samples: 4
Max nTPM: 187.0
Min nTPM: 173.2
RHH5315_R3682
174.2
RHH5223_R3595
184.3
RHH5252_R3624
187.0
RHH5281_R3653
173.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.0
Schmiedel sample id
TPM
Classical monocyte TPM: 31.0
Samples: 91
Max TPM: 38.4
Min TPM: 22.7
MONOCYTES_1
38.4
MONOCYTES_2
37.2
MONOCYTES_3
36.7
MONOCYTES_4
36.7
MONOCYTES_5
36.1
MONOCYTES_6
35.8
MONOCYTES_7
35.4
MONOCYTES_8
35.1
MONOCYTES_9
35.1
MONOCYTES_10
35.0
MONOCYTES_11
35.0
MONOCYTES_12
34.9
MONOCYTES_13
34.9
MONOCYTES_14
34.6
MONOCYTES_15
34.5
MONOCYTES_16
34.5
MONOCYTES_17
34.5
MONOCYTES_18
34.4
MONOCYTES_19
34.4
MONOCYTES_20
34.2
MONOCYTES_21
34.1
MONOCYTES_22
34.0
MONOCYTES_23
34.0
MONOCYTES_24
33.7
MONOCYTES_25
33.5
MONOCYTES_26
33.4
MONOCYTES_27
33.4
MONOCYTES_28
33.4
MONOCYTES_29
33.1
MONOCYTES_30
33.0
MONOCYTES_31
33.0
MONOCYTES_32
32.9
MONOCYTES_33
32.6
MONOCYTES_34
32.2
MONOCYTES_35
31.9
MONOCYTES_36
31.9
MONOCYTES_37
31.8
MONOCYTES_38
31.8
MONOCYTES_39
31.6
MONOCYTES_40
31.5
MONOCYTES_41
31.5
MONOCYTES_42
31.4
MONOCYTES_43
31.4
MONOCYTES_44
31.3
MONOCYTES_45
31.3
MONOCYTES_46
31.0
MONOCYTES_47
30.8
MONOCYTES_48
30.8
MONOCYTES_49
30.5
MONOCYTES_50
30.4
MONOCYTES_51
30.3
MONOCYTES_52
30.2
MONOCYTES_53
30.1
MONOCYTES_54
30.0
MONOCYTES_55
29.7
MONOCYTES_56
29.5
MONOCYTES_57
29.5
MONOCYTES_58
29.5
MONOCYTES_59
29.4
MONOCYTES_60
29.4
MONOCYTES_61
29.4
MONOCYTES_62
29.3
MONOCYTES_63
29.2
MONOCYTES_64
29.2
MONOCYTES_65
29.1
MONOCYTES_66
28.9
MONOCYTES_67
28.9
MONOCYTES_68
28.9
MONOCYTES_69
28.8
MONOCYTES_70
28.7
MONOCYTES_71
28.6
MONOCYTES_72
28.5
MONOCYTES_73
28.5
MONOCYTES_74
28.5
MONOCYTES_75
28.2
MONOCYTES_76
28.0
MONOCYTES_77
27.9
MONOCYTES_78
27.7
MONOCYTES_79
27.6
MONOCYTES_80
27.5
MONOCYTES_81
27.5
MONOCYTES_82
27.4
MONOCYTES_83
27.3
MONOCYTES_84
26.7
MONOCYTES_85
26.5
MONOCYTES_86
25.1
MONOCYTES_87
24.2
MONOCYTES_88
24.0
MONOCYTES_89
23.9
MONOCYTES_90
23.8
MONOCYTES_91
22.7
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Non-classical monocyte TPM: 25.7
Samples: 90
Max TPM: 32.0
Min TPM: 18.7
M2_1
32.0
M2_2
31.9
M2_3
31.5
M2_4
30.6
M2_5
30.3
M2_6
30.2
M2_7
29.5
M2_8
29.5
M2_9
29.2
M2_10
29.1
M2_11
29.0
M2_12
28.9
M2_13
28.8
M2_14
28.8
M2_15
28.3
M2_16
28.2
M2_17
28.1
M2_18
28.1
M2_19
27.9
M2_20
27.8
M2_21
27.8
M2_22
27.7
M2_23
27.4
M2_24
27.3
M2_25
27.3
M2_26
27.3
M2_27
27.2
M2_28
27.1
M2_29
27.1
M2_30
27.0
M2_31
26.8
M2_32
26.8
M2_33
26.7
M2_34
26.6
M2_35
26.5
M2_36
26.3
M2_37
26.2
M2_38
26.2
M2_39
26.2
M2_40
26.1
M2_41
26.1
M2_42
26.0
M2_43
25.9
M2_44
25.7
M2_45
25.7
M2_46
25.7
M2_47
25.7
M2_48
25.6
M2_49
25.6
M2_50
25.6
M2_51
25.5
M2_52
25.5
M2_53
25.4
M2_54
25.4
M2_55
25.3
M2_56
25.1
M2_57
25.1
M2_58
25.1
M2_59
25.1
M2_60
25.0
M2_61
25.0
M2_62
24.9
M2_63
24.8
M2_64
24.5
M2_65
24.5
M2_66
24.3
M2_67
24.2
M2_68
24.2
M2_69
24.1
M2_70
24.1
M2_71
24.0
M2_72
23.2
M2_73
23.1
M2_74
23.0
M2_75
23.0
M2_76
22.8
M2_77
22.8
M2_78
22.6
M2_79
22.4
M2_80
22.3
M2_81
21.9
M2_82
21.7
M2_83
21.7
M2_84
21.5
M2_85
21.4
M2_86
20.9
M2_87
20.7
M2_88
20.0
M2_89
19.8
M2_90
18.7
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