A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.8
nTPM
Monaco:
60.7
nTPM
Schmiedel:
31.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.8
HPA sample
nTPM
Memory B-cell nTPM: 6.4
Samples: 6
Max nTPM: 9.0
Min nTPM: 4.3
P10809_1017
7.8
P10809_1025
9.0
P10809_1044
4.3
P10809_1063
5.7
P10809_1092
4.4
P10809_1105
7.4
Naive B-cell nTPM: 7.8
Samples: 6
Max nTPM: 9.9
Min nTPM: 6.6
P10809_1011
6.7
P10809_1029
8.3
P10809_1048
9.9
P10809_1067
6.6
P10809_1091
7.5
P10809_1104
7.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.0
Samples: 4
Max nTPM: 54.5
Min nTPM: 23.8
RHH5310_R3677
48.9
RHH5218_R3590
54.5
RHH5247_R3619
52.7
RHH5276_R3648
23.8
Naive B-cell nTPM: 60.7
Samples: 4
Max nTPM: 85.3
Min nTPM: 44.8
RHH5308_R3675
53.4
RHH5216_R3588
85.3
RHH5245_R3617
59.2
RHH5274_R3646
44.8
Non-switched memory B-cell nTPM: 60.0
Samples: 4
Max nTPM: 74.3
Min nTPM: 50.9
RHH5309_R3676
50.9
RHH5217_R3589
74.3
RHH5246_R3618
62.2
RHH5275_R3647
52.7
Plasmablast nTPM: 38.3
Samples: 4
Max nTPM: 40.7
Min nTPM: 36.5
RHH5312_R3679
40.7
RHH5220_R3592
37.9
RHH5249_R3621
38.3
RHH5278_R3650
36.5
Switched memory B-cell nTPM: 32.3
Samples: 4
Max nTPM: 40.7
Min nTPM: 25.7
RHH5311_R3678
40.7
RHH5219_R3591
25.7
RHH5248_R3620
26.0
RHH5277_R3649
36.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
Naive B-cell TPM: 31.5
Samples: 91
Max TPM: 42.0
Min TPM: 20.0
B_CELL_NAIVE_1
42.0
B_CELL_NAIVE_2
38.5
B_CELL_NAIVE_3
38.5
B_CELL_NAIVE_4
38.0
B_CELL_NAIVE_5
38.0
B_CELL_NAIVE_6
37.9
B_CELL_NAIVE_7
37.4
B_CELL_NAIVE_8
37.2
B_CELL_NAIVE_9
36.1
B_CELL_NAIVE_10
36.0
B_CELL_NAIVE_11
35.9
B_CELL_NAIVE_12
35.7
B_CELL_NAIVE_13
35.1
B_CELL_NAIVE_14
35.0
B_CELL_NAIVE_15
34.7
B_CELL_NAIVE_16
34.4
B_CELL_NAIVE_17
34.4
B_CELL_NAIVE_18
34.4
B_CELL_NAIVE_19
34.2
B_CELL_NAIVE_20
34.0
B_CELL_NAIVE_21
33.9
B_CELL_NAIVE_22
33.9
B_CELL_NAIVE_23
33.9
B_CELL_NAIVE_24
33.7
B_CELL_NAIVE_25
33.7
B_CELL_NAIVE_26
33.6
B_CELL_NAIVE_27
33.6
B_CELL_NAIVE_28
33.6
B_CELL_NAIVE_29
33.4
B_CELL_NAIVE_30
33.4
B_CELL_NAIVE_31
33.3
B_CELL_NAIVE_32
33.1
B_CELL_NAIVE_33
33.0
B_CELL_NAIVE_34
33.0
B_CELL_NAIVE_35
32.9
B_CELL_NAIVE_36
32.9
B_CELL_NAIVE_37
32.2
B_CELL_NAIVE_38
32.0
B_CELL_NAIVE_39
31.9
B_CELL_NAIVE_40
31.8
B_CELL_NAIVE_41
31.7
B_CELL_NAIVE_42
31.7
B_CELL_NAIVE_43
31.7
B_CELL_NAIVE_44
31.5
B_CELL_NAIVE_45
31.5
B_CELL_NAIVE_46
31.5
B_CELL_NAIVE_47
31.5
B_CELL_NAIVE_48
31.3
B_CELL_NAIVE_49
30.9
B_CELL_NAIVE_50
30.9
B_CELL_NAIVE_51
30.9
B_CELL_NAIVE_52
30.7
B_CELL_NAIVE_53
30.6
B_CELL_NAIVE_54
30.4
B_CELL_NAIVE_55
30.2
B_CELL_NAIVE_56
30.2
B_CELL_NAIVE_57
30.2
B_CELL_NAIVE_58
30.2
B_CELL_NAIVE_59
30.1
B_CELL_NAIVE_60
30.1
B_CELL_NAIVE_61
30.1
B_CELL_NAIVE_62
30.1
B_CELL_NAIVE_63
30.0
B_CELL_NAIVE_64
29.8
B_CELL_NAIVE_65
29.8
B_CELL_NAIVE_66
29.7
B_CELL_NAIVE_67
29.5
B_CELL_NAIVE_68
29.3
B_CELL_NAIVE_69
29.2
B_CELL_NAIVE_70
29.0
B_CELL_NAIVE_71
29.0
B_CELL_NAIVE_72
28.9
B_CELL_NAIVE_73
28.9
B_CELL_NAIVE_74
28.8
B_CELL_NAIVE_75
28.8
B_CELL_NAIVE_76
28.8
B_CELL_NAIVE_77
28.2
B_CELL_NAIVE_78
27.9
B_CELL_NAIVE_79
27.7
B_CELL_NAIVE_80
27.6
B_CELL_NAIVE_81
27.3
B_CELL_NAIVE_82
26.1
B_CELL_NAIVE_83
26.1
B_CELL_NAIVE_84
25.9
B_CELL_NAIVE_85
25.8
B_CELL_NAIVE_86
25.7
B_CELL_NAIVE_87
24.8
B_CELL_NAIVE_88
24.6
B_CELL_NAIVE_89
24.2
B_CELL_NAIVE_90
23.1
B_CELL_NAIVE_91
20.0
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The Human Protein Atlas project is funded
