A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.8
nTPM
Monaco:
184.7
nTPM
Schmiedel:
57.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.8
HPA sample
nTPM
Classical monocyte nTPM: 31.0
Samples: 6
Max nTPM: 43.0
Min nTPM: 22.0
P10809_1003
30.8
P10809_1020
34.8
P10809_1039
43.0
P10809_1058
22.0
P10809_1080
28.4
P10809_1107
27.0
Intermediate monocyte nTPM: 24.0
Samples: 6
Max nTPM: 33.1
Min nTPM: 14.5
P10809_1004
23.7
P10809_1023
26.1
P10809_1042
33.1
P10809_1061
24.9
P10809_1081
14.5
P10809_1108
21.5
Non-classical monocyte nTPM: 31.8
Samples: 5
Max nTPM: 73.8
Min nTPM: 13.5
P10809_1005
19.3
P10809_1053
33.7
P10809_1072
73.8
P10809_1082
13.5
P10809_1109
18.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
184.7
Monaco sample
nTPM
Classical monocyte nTPM: 184.8
Samples: 4
Max nTPM: 219.5
Min nTPM: 146.3
RHH5313_R3680
197.0
RHH5221_R3593
219.5
RHH5250_R3622
176.2
RHH5279_R3651
146.3
Intermediate monocyte nTPM: 136.3
Samples: 4
Max nTPM: 158.9
Min nTPM: 104.8
RHH5314_R3681
158.9
RHH5222_R3594
150.6
RHH5251_R3623
104.8
RHH5280_R3652
131.0
Non-classical monocyte nTPM: 145.6
Samples: 4
Max nTPM: 161.9
Min nTPM: 136.2
RHH5315_R3682
161.9
RHH5223_R3595
146.4
RHH5252_R3624
137.7
RHH5281_R3653
136.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.2
Schmiedel sample id
TPM
Classical monocyte TPM: 57.2
Samples: 91
Max TPM: 79.8
Min TPM: 37.5
MONOCYTES_1
79.8
MONOCYTES_2
78.6
MONOCYTES_3
74.4
MONOCYTES_4
73.8
MONOCYTES_5
73.0
MONOCYTES_6
72.7
MONOCYTES_7
71.9
MONOCYTES_8
71.9
MONOCYTES_9
70.1
MONOCYTES_10
69.8
MONOCYTES_11
69.5
MONOCYTES_12
69.4
MONOCYTES_13
67.8
MONOCYTES_14
67.2
MONOCYTES_15
66.9
MONOCYTES_16
65.9
MONOCYTES_17
65.7
MONOCYTES_18
63.9
MONOCYTES_19
63.5
MONOCYTES_20
63.5
MONOCYTES_21
62.6
MONOCYTES_22
62.6
MONOCYTES_23
62.4
MONOCYTES_24
62.2
MONOCYTES_25
61.6
MONOCYTES_26
61.6
MONOCYTES_27
61.0
MONOCYTES_28
60.8
MONOCYTES_29
60.2
MONOCYTES_30
60.0
MONOCYTES_31
60.0
MONOCYTES_32
59.2
MONOCYTES_33
59.0
MONOCYTES_34
58.8
MONOCYTES_35
58.3
MONOCYTES_36
58.0
MONOCYTES_37
58.0
MONOCYTES_38
57.9
MONOCYTES_39
57.8
MONOCYTES_40
57.7
MONOCYTES_41
57.7
MONOCYTES_42
57.6
MONOCYTES_43
57.4
MONOCYTES_44
56.8
MONOCYTES_45
56.7
MONOCYTES_46
56.5
MONOCYTES_47
56.2
MONOCYTES_48
56.1
MONOCYTES_49
56.0
MONOCYTES_50
55.3
MONOCYTES_51
54.7
MONOCYTES_52
54.6
MONOCYTES_53
54.6
MONOCYTES_54
54.4
MONOCYTES_55
54.4
MONOCYTES_56
54.2
MONOCYTES_57
53.9
MONOCYTES_58
53.8
MONOCYTES_59
53.1
MONOCYTES_60
53.0
MONOCYTES_61
52.9
MONOCYTES_62
52.6
MONOCYTES_63
52.4
MONOCYTES_64
52.1
MONOCYTES_65
51.8
MONOCYTES_66
51.4
MONOCYTES_67
51.4
MONOCYTES_68
51.2
MONOCYTES_69
51.1
MONOCYTES_70
50.5
MONOCYTES_71
50.4
MONOCYTES_72
50.2
MONOCYTES_73
50.0
MONOCYTES_74
49.9
MONOCYTES_75
49.9
MONOCYTES_76
49.0
MONOCYTES_77
48.7
MONOCYTES_78
48.4
MONOCYTES_79
48.4
MONOCYTES_80
47.7
MONOCYTES_81
47.3
MONOCYTES_82
47.1
MONOCYTES_83
47.1
MONOCYTES_84
45.8
MONOCYTES_85
45.8
MONOCYTES_86
45.5
MONOCYTES_87
45.3
MONOCYTES_88
44.4
MONOCYTES_89
44.1
MONOCYTES_90
42.0
MONOCYTES_91
37.5
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Non-classical monocyte TPM: 55.8
Samples: 90
Max TPM: 78.6
Min TPM: 41.1
M2_1
78.6
M2_2
78.5
M2_3
77.5
M2_4
71.9
M2_5
71.0
M2_6
70.9
M2_7
70.5
M2_8
69.9
M2_9
68.8
M2_10
68.0
M2_11
67.1
M2_12
66.6
M2_13
66.1
M2_14
65.8
M2_15
65.7
M2_16
65.7
M2_17
64.8
M2_18
63.7
M2_19
62.4
M2_20
60.7
M2_21
59.7
M2_22
59.6
M2_23
59.4
M2_24
59.3
M2_25
59.2
M2_26
59.2
M2_27
59.2
M2_28
58.6
M2_29
58.5
M2_30
58.1
M2_31
58.1
M2_32
57.1
M2_33
56.7
M2_34
56.7
M2_35
56.5
M2_36
56.5
M2_37
56.4
M2_38
56.4
M2_39
56.4
M2_40
55.8
M2_41
55.7
M2_42
55.7
M2_43
54.6
M2_44
54.4
M2_45
54.1
M2_46
53.5
M2_47
53.5
M2_48
53.4
M2_49
53.4
M2_50
53.2
M2_51
53.0
M2_52
52.9
M2_53
52.8
M2_54
52.2
M2_55
52.2
M2_56
52.1
M2_57
51.9
M2_58
51.6
M2_59
51.5
M2_60
51.4
M2_61
51.2
M2_62
51.2
M2_63
51.1
M2_64
50.5
M2_65
50.5
M2_66
50.4
M2_67
50.4
M2_68
50.4
M2_69
50.2
M2_70
49.9
M2_71
49.7
M2_72
49.4
M2_73
48.9
M2_74
48.7
M2_75
48.2
M2_76
47.8
M2_77
47.2
M2_78
47.1
M2_79
47.0
M2_80
46.6
M2_81
46.5
M2_82
46.1
M2_83
45.4
M2_84
45.1
M2_85
44.4
M2_86
44.2
M2_87
44.0
M2_88
42.7
M2_89
42.4
M2_90
41.1
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