MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.6 nTPM
HPA Brain:130.1 nTPM
GTEx:167.6 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:38.2 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 130.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.7
2586 Male, age 75, left hemisphere 174.4
2666 Male, age 74, left hemisphere 137.8
2828 Female, age 72, unknown 127.4
2019 Male, age 18, unknown 126.1
1833 Male, age 53, unknown 112.8
1830 Male, age 51, unknown 111.3
1827 Male, age 72, unknown 107.9
1870 Female, age 42, unknown 105.1
2411 Female, age 72, unknown 102.0
2219 Male, age 76, both hemispheres 82.1
Dorsal raphe nucleus
nTPM: 94.5
2016 Female, age 72, unknown 101.8
2750 Male, age 76, both hemispheres 101.5
1828 Male, age 53, unknown 96.5
2047 Male, age 72, unknown 95.0
2298 Female, age 72, unknown 77.9
Inferior colliculus
nTPM: 91.2
1848 Female, age 42, unknown 104.6
1890 Male, age 53, unknown 93.2
2849 Male, age 72, unknown 90.6
2097 Female, age 72, unknown 76.4
Median raphe nucleus
nTPM: 77.7
2220 Male, age 76, midline 77.7
Periaquaductal grey, anterior
nTPM: 110.8
2502 Female, age 75, unknown 114.9
1947 Male, age 18, unknown 114.2
1795 Male, age 51, unknown 103.2
Periaquaductal grey, dorsal
nTPM: 86.5
1840 Male, age 53, unknown 91.9
1831 Male, age 72, unknown 89.2
2464 Female, age 72, unknown 89.0
2850 Male, age 76, both hemispheres 76.0
Periaquaductal grey, lateral
nTPM: 90.4
2053 Male, age 18, unknown 98.9
2140 Male, age 76, both hemispheres 92.4
2272 Male, age 74, both hemispheres 79.8
Pretectal area
nTPM: 114.0
2007 Male, age 72, unknown 149.2
1817 Female, age 42, unknown 134.0
1815 Male, age 53, unknown 132.2
1816 Male, age 51, unknown 120.8
2407 Male, age 75, both hemispheres 120.5
2316 Male, age 76, right hemisphere 116.6
1944 Female, age 72, unknown 115.8
2667 Female, age 75, unknown 109.7
2825 Male, age 18, unknown 94.7
2224 Female, age 72, unknown 83.6
2273 Male, age 74, both hemispheres 76.9
Red nucleus
nTPM: 130.1
2584 Male, age 75, left hemisphere 146.0
2785 Male, age 18, unknown 143.4
1904 Male, age 53, unknown 141.3
2588 Male, age 74, left hemisphere 137.7
2503 Female, age 72, unknown 137.4
2823 Male, age 76, right hemisphere 133.0
2769 Male, age 72, unknown 131.1
2227 Male, age 72, unknown 127.1
1865 Male, age 51, unknown 126.9
1821 Female, age 72, unknown 116.9
1954 Female, age 42, unknown 111.4
2725 Female, age 75, unknown 108.6
Substantia nigra
nTPM: 114.8
1916 Female, age 42, unknown 130.1
1889 Female, age 72, unknown 128.6
2583 Male, age 75, right hemisphere 126.1
1851 Male, age 51, unknown 124.7
2409 Female, age 72, unknown 118.5
2665 Male, age 74, both hemispheres 115.4
2699 Male, age 18, unknown 112.1
2590 Female, age 75, unknown 111.9
2241 Male, age 72, unknown 91.6
1941 Male, age 53, unknown 88.4
Superior colliculus
nTPM: 117.1
2664 Male, age 75, both hemispheres 153.4
2668 Female, age 75, unknown 138.4
1895 Male, age 76, right hemisphere 119.1
1796 Male, age 53, unknown 116.1
1995 Male, age 72, unknown 113.0
1839 Male, age 51, unknown 111.0
2087 Female, age 72, unknown 108.6
2587 Male, age 74, left hemisphere 106.8
2261 Male, age 18, unknown 102.6
1913 Female, age 42, unknown 102.2
Ventral tegmental area
nTPM: 101.6
2410 Female, age 72, unknown 120.9
1915 Female, age 42, unknown 106.1
1942 Male, age 51, unknown 102.6
2218 Male, age 76, both hemispheres 97.2
2021 Male, age 53, unknown 93.1
2223 Female, age 72, unknown 89.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 167.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.6
Samples: 183

Max nTPM: 320.5
Min nTPM: 41.9
Std nTPM: 41.5
Median nTPM: 161.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 320.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 301.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 278.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 277.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 260.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 253.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 248.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 245.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 243.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 238.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 238.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 40.2
Min nTPM: 14.9
Sample A Female 40.2
Sample B Female 29.3
Sample C Male 38.8
Sample D Male 14.9
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 22.1
Sample C Male 47.3
Sample D Male 26.1
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 26.6
Min nTPM: 17.7
Sample B Female 20.4
Sample C Male 26.6
Sample D Male 17.7
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 38.4
Min nTPM: 26.8
Sample A Female 29.2
Sample B Female 26.8
Sample C Male 38.4
Sample D Male 28.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 32.9
Sample A Male 35.8
Sample B Male 32.9
Sample C Female 44.3
Sample D Female 39.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
71923998 Antisense, RP_051017_02_H03, Mouse strain C57BL/6J (56 days, male) 3.4
75694351 Antisense, RP_060518_03_F03, Mouse strain C57BL/6J (56 days, male) 2.6

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