MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.4 nTPM
HPA Brain:119.3 nTPM
GTEx:72.4 nTPM
FANTOM5:89.6 Scaled Tags Per Million
Pig:101.4 nTPM
Mouse:162.5 nTPM
Allen mouse:14.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.6
2586 Male, age 75, left hemisphere 145.8
2019 Male, age 18, unknown 139.4
2411 Female, age 72, unknown 122.2
2666 Male, age 74, left hemisphere 116.8
1870 Female, age 42, unknown 110.7
1830 Male, age 51, unknown 110.2
1827 Male, age 72, unknown 109.4
2828 Female, age 72, unknown 109.0
2219 Male, age 76, both hemispheres 108.7
1833 Male, age 53, unknown 104.2
Dorsal raphe nucleus
nTPM: 100.3
2750 Male, age 76, both hemispheres 114.5
1828 Male, age 53, unknown 111.0
2047 Male, age 72, unknown 97.3
2298 Female, age 72, unknown 92.3
2016 Female, age 72, unknown 86.3
Inferior colliculus
nTPM: 98.7
1890 Male, age 53, unknown 106.4
2097 Female, age 72, unknown 103.2
1848 Female, age 42, unknown 94.9
2849 Male, age 72, unknown 90.4
Median raphe nucleus
nTPM: 96.8
2220 Male, age 76, midline 96.8
Periaquaductal grey, anterior
nTPM: 105.4
2502 Female, age 75, unknown 109.8
1947 Male, age 18, unknown 103.5
1795 Male, age 51, unknown 103.0
Periaquaductal grey, dorsal
nTPM: 81.6
2464 Female, age 72, unknown 91.9
1831 Male, age 72, unknown 83.8
1840 Male, age 53, unknown 80.5
2850 Male, age 76, both hemispheres 70.4
Periaquaductal grey, lateral
nTPM: 83.9
2053 Male, age 18, unknown 88.9
2272 Male, age 74, both hemispheres 88.6
2140 Male, age 76, both hemispheres 74.1
Pretectal area
nTPM: 117.7
2007 Male, age 72, unknown 154.9
1816 Male, age 51, unknown 143.0
1817 Female, age 42, unknown 139.9
1815 Male, age 53, unknown 133.0
1944 Female, age 72, unknown 131.3
2407 Male, age 75, both hemispheres 115.6
2667 Female, age 75, unknown 115.2
2316 Male, age 76, right hemisphere 96.3
2224 Female, age 72, unknown 89.5
2273 Male, age 74, both hemispheres 88.8
2825 Male, age 18, unknown 86.8
Red nucleus
nTPM: 119.1
2584 Male, age 75, left hemisphere 151.0
2785 Male, age 18, unknown 142.4
2588 Male, age 74, left hemisphere 126.6
2503 Female, age 72, unknown 115.9
2227 Male, age 72, unknown 115.8
1821 Female, age 72, unknown 115.5
1904 Male, age 53, unknown 114.5
2823 Male, age 76, right hemisphere 114.3
2769 Male, age 72, unknown 114.2
1865 Male, age 51, unknown 113.2
1954 Female, age 42, unknown 105.2
2725 Female, age 75, unknown 100.8
Substantia nigra
nTPM: 119.3
2583 Male, age 75, right hemisphere 140.3
1889 Female, age 72, unknown 131.8
1851 Male, age 51, unknown 126.7
1916 Female, age 42, unknown 125.7
2590 Female, age 75, unknown 121.9
1941 Male, age 53, unknown 120.3
2665 Male, age 74, both hemispheres 112.7
2241 Male, age 72, unknown 111.8
2409 Female, age 72, unknown 104.7
2699 Male, age 18, unknown 97.6
Superior colliculus
nTPM: 112.6
2668 Female, age 75, unknown 123.5
2261 Male, age 18, unknown 121.0
1913 Female, age 42, unknown 120.1
2664 Male, age 75, both hemispheres 118.0
2087 Female, age 72, unknown 116.1
1995 Male, age 72, unknown 108.9
2587 Male, age 74, left hemisphere 108.6
1796 Male, age 53, unknown 107.0
1895 Male, age 76, right hemisphere 104.9
1839 Male, age 51, unknown 97.7
Ventral tegmental area
nTPM: 111.9
2410 Female, age 72, unknown 129.0
2223 Female, age 72, unknown 121.7
1942 Male, age 51, unknown 109.8
1915 Female, age 42, unknown 108.2
2218 Male, age 76, both hemispheres 105.3
2021 Male, age 53, unknown 97.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 183

Max nTPM: 127.9
Min nTPM: 42.2
Std nTPM: 15.3
Median nTPM: 71.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 127.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 115.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 114.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 109.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 106.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 103.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 98.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.6
FF:10158-103A5 76 years, female 89.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 101.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.4
Samples: 4

Max nTPM: 122.6
Min nTPM: 81.2
Sample A Female 122.6
Sample B Female 81.2
Sample C Male 91.7
Sample D Male 110.0
Midbrain
nTPM: 98.0
Samples: 4

Max nTPM: 153.3
Min nTPM: 73.4
Sample A Female 153.3
Sample B Female 73.4
Sample C Male 85.5
Sample D Male 79.8
Periaqueductal gray
nTPM: 64.3
Samples: 3

Max nTPM: 68.2
Min nTPM: 57.3
Sample B Female 68.2
Sample C Male 67.3
Sample D Male 57.3
Superior colliculi
nTPM: 86.0
Samples: 4

Max nTPM: 109.6
Min nTPM: 58.0
Sample A Female 109.6
Sample B Female 58.0
Sample C Male 93.4
Sample D Male 82.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 162.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.5
Samples: 4

Max nTPM: 168.5
Min nTPM: 158.8
Sample A Male 158.8
Sample B Male 160.2
Sample C Female 162.6
Sample D Female 168.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
70445532 Antisense, RP_050614_04_A08, Mouse strain C57BL/6J (56 days, male) 14.5

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