MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:137.3 nTPM
HPA Brain:104.4 nTPM
GTEx:137.3 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:155.2 nTPM
Mouse:192.0 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.1
2019 Male, age 18, unknown 109.3
1827 Male, age 72, unknown 105.5
2411 Female, age 72, unknown 99.2
2666 Male, age 74, left hemisphere 90.1
1870 Female, age 42, unknown 89.4
2828 Female, age 72, unknown 87.8
1833 Male, age 53, unknown 81.9
2219 Male, age 76, both hemispheres 79.9
1830 Male, age 51, unknown 79.4
2586 Male, age 75, left hemisphere 78.0
Dorsal raphe nucleus
nTPM: 95.0
2298 Female, age 72, unknown 113.7
2750 Male, age 76, both hemispheres 95.9
2047 Male, age 72, unknown 94.8
1828 Male, age 53, unknown 87.6
2016 Female, age 72, unknown 83.2
Inferior colliculus
nTPM: 85.9
2097 Female, age 72, unknown 103.2
1890 Male, age 53, unknown 90.1
1848 Female, age 42, unknown 78.9
2849 Male, age 72, unknown 71.3
Median raphe nucleus
nTPM: 91.5
2220 Male, age 76, midline 91.5
Periaquaductal grey, anterior
nTPM: 100.5
2502 Female, age 75, unknown 107.6
1795 Male, age 51, unknown 99.9
1947 Male, age 18, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 79.4
1840 Male, age 53, unknown 83.4
1831 Male, age 72, unknown 82.7
2464 Female, age 72, unknown 82.0
2850 Male, age 76, both hemispheres 69.4
Periaquaductal grey, lateral
nTPM: 82.9
2272 Male, age 74, both hemispheres 91.7
2140 Male, age 76, both hemispheres 80.2
2053 Male, age 18, unknown 76.8
Pretectal area
nTPM: 99.5
2007 Male, age 72, unknown 125.7
1816 Male, age 51, unknown 118.3
1817 Female, age 42, unknown 113.8
1944 Female, age 72, unknown 110.2
2667 Female, age 75, unknown 103.0
1815 Male, age 53, unknown 98.4
2273 Male, age 74, both hemispheres 96.7
2224 Female, age 72, unknown 96.6
2316 Male, age 76, right hemisphere 84.0
2825 Male, age 18, unknown 79.5
2407 Male, age 75, both hemispheres 68.7
Red nucleus
nTPM: 93.9
2785 Male, age 18, unknown 108.6
2503 Female, age 72, unknown 105.7
1821 Female, age 72, unknown 105.4
1954 Female, age 42, unknown 95.2
1904 Male, age 53, unknown 91.8
2823 Male, age 76, right hemisphere 91.8
2725 Female, age 75, unknown 91.0
1865 Male, age 51, unknown 90.7
2227 Male, age 72, unknown 89.2
2769 Male, age 72, unknown 87.9
2588 Male, age 74, left hemisphere 85.4
2584 Male, age 75, left hemisphere 84.0
Substantia nigra
nTPM: 104.4
1916 Female, age 42, unknown 140.4
1851 Male, age 51, unknown 119.6
1941 Male, age 53, unknown 110.9
2409 Female, age 72, unknown 110.4
1889 Female, age 72, unknown 102.9
2665 Male, age 74, both hemispheres 100.2
2241 Male, age 72, unknown 93.6
2590 Female, age 75, unknown 91.5
2699 Male, age 18, unknown 89.9
2583 Male, age 75, right hemisphere 84.1
Superior colliculus
nTPM: 90.8
1796 Male, age 53, unknown 105.6
2261 Male, age 18, unknown 103.3
2087 Female, age 72, unknown 99.7
2587 Male, age 74, left hemisphere 98.3
2668 Female, age 75, unknown 93.1
1895 Male, age 76, right hemisphere 87.5
1913 Female, age 42, unknown 85.1
1995 Male, age 72, unknown 83.8
1839 Male, age 51, unknown 76.5
2664 Male, age 75, both hemispheres 75.0
Ventral tegmental area
nTPM: 95.9
1915 Female, age 42, unknown 110.4
2410 Female, age 72, unknown 105.0
2218 Male, age 76, both hemispheres 94.6
1942 Male, age 51, unknown 94.0
2223 Female, age 72, unknown 90.1
2021 Male, age 53, unknown 81.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 137.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.3
Samples: 183

Max nTPM: 232.5
Min nTPM: 83.4
Std nTPM: 26.9
Median nTPM: 134.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 232.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 221.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 196.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 195.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 192.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 192.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 192.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 191.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 184.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 184.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 182.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 155.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.7
Samples: 4

Max nTPM: 189.8
Min nTPM: 106.8
Sample A Female 189.8
Sample B Female 106.8
Sample C Male 133.0
Sample D Male 121.0
Midbrain
nTPM: 154.4
Samples: 4

Max nTPM: 220.6
Min nTPM: 116.1
Sample A Female 220.6
Sample B Female 116.1
Sample C Male 154.5
Sample D Male 126.3
Periaqueductal gray
nTPM: 115.9
Samples: 3

Max nTPM: 140.2
Min nTPM: 102.7
Sample B Female 102.7
Sample C Male 140.2
Sample D Male 104.8
Superior colliculi
nTPM: 155.2
Samples: 4

Max nTPM: 200.7
Min nTPM: 121.2
Sample A Female 200.7
Sample B Female 121.2
Sample C Male 164.0
Sample D Male 134.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 192.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 192.0
Samples: 4

Max nTPM: 204.6
Min nTPM: 179.0
Sample A Male 204.6
Sample B Male 191.1
Sample C Female 179.0
Sample D Female 193.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75198064 Antisense, RP_060502_01_F05, Mouse strain C57BL/6J (56 days, male) 1.2

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